Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq2 187 3e-42 seq4 118 1e-21 seq8 96.9 4e-15 >seq2 Length=61504503 Score = 187 bits (206), Expect = 3e-42 Identities = 298/428 (70%), Gaps = 0/428 (0%) Strand=Plus/Plus Query 8446 AAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTC 8505 ||||| || || |||||| | || ||||| |||||| ||| ||||| || | | Sbjct 2077916 AAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGC 2077975 Query 8506 ATACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGG 8565 ||||| | ||| | | ||||||| | |||||| ||| || | |||| | | Sbjct 2077976 ATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAG 2078035 Query 8566 AAGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCA 8625 ||||| | | || | || ||| || || || || || ||||||||||| | | ||| Sbjct 2078036 AAGTGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCA 2078095 Query 8626 GCTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCA 8685 ||||||||||| || || ||||| ||||| || || |||| |||| | |||||| Sbjct 2078096 GCTTCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCA 2078155 Query 8686 GAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATA 8745 ||||| || ||||||||||| | || ||||| | |||||| ||||||||||| || ||| Sbjct 2078156 GAGATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATA 2078215 Query 8746 TCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAA 8805 || || || || ||||| || || || | ||||| || || || | || ||| | Sbjct 2078216 TCTACTGGAGGGGCAGCGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTA 2078275 Query 8806 GGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCAC 8865 || ||||| | ||| || ||||| |||| ||||| | ||| | || || || | ||| Sbjct 2078276 GGGATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAG 2078335 Query 8866 TCGCAAAA 8873 | ||| || Sbjct 2078336 TTGCAGAA 2078343 >seq4 Length=49548238 Score = 118 bits (130), Expect = 1e-21 Identities = 219/320 (68%), Gaps = 1/320 (0%) Strand=Plus/Minus Query 8399 CTAGAGGC-ATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCG 8457 ||| |||| || ||||||| || || ||||||| || | | ||||| || || Sbjct 24272844 CTAAAGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCA 24272785 Query 8458 AAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGG 8517 |||||| | || ||||| |||||| ||| ||||| || | |||||| | ||| Sbjct 24272784 GTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGG 24272725 Query 8518 TATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATA 8577 | | ||||||| |||||| ||| || | |||| | |||||| | | | Sbjct 24272724 AAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACA 24272665 Query 8578 ACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATG 8637 | | || ||| || || || || || ||||||||||| | | |||||||||||||| Sbjct 24272664 ATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATT 24272605 Query 8638 GGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTG 8697 || || ||||| ||||| || || |||| |||| | ||||||||||| || ||| Sbjct 24272604 GGGTAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTG 24272545 Query 8698 TTTCCATACATGAATGAACC 8717 |||||||| | || ||||| Sbjct 24272544 TTTCCATAAAGTAAAGAACC 24272525 >seq8 Length=47074253 Score = 96.9 bits (106), Expect = 4e-15 Identities = 122/168 (73%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 8679 AGCACCAGAGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACC 8738 ||||||||||| || || |||||||| | || ||||| |||||| ||||||||||| Sbjct 5860521 AGCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATACC 5860580 Query 8739 GTCGATATCGACAGGTGGAGCAGCAATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAA 8798 || ||||| || || |||||||| || || || | ||||| | || || | || Sbjct 5860581 ATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAA 5860640 Query 8799 CAAGCAAGGAATCATTAGAACTCCAAACCAACCGACATAAAGTCTGTT 8846 ||| ||| ||||| | ||| || ||||| |||| ||||| | ||| Sbjct 5860641 TAAGGTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTT 5860688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615799366483360