Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq2 201 3e-47 seq4 158 4e-34 seq6 82.4 2e-11 >seq2 Length=61504503 Score = 201 bits (222), Expect = 3e-47 Identities = 313/445 (70%), Gaps = 7/445 (2%) Strand=Plus/Minus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | ||||||||||| || | ||||| || | ||| ||| |||| || Sbjct 2078316 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC-TACCTTATTGACCGCAAC 2078258 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || ||||||||||| || | | || || || || || || ||||| || || || Sbjct 2078257 TTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGA 2078198 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 || || |||| || | | ||||| ||||| || || || || ||| | |||| | Sbjct 2078197 GCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTAC 2078138 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || |||||| | ||||| |||||||||||||||||||| | ||||||| || Sbjct 2078137 TTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTG 2078078 Query 41500 GCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGC 41559 | | ||||| ||||| || | | || | || | |||||| | |||| || | Sbjct 2078077 GTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTG 2078018 Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||| ||||| || |||||||||||||| | || || || ||| | || ||||| ||| Sbjct 2078017 TTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGT 2077958 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTT-----TATCCGTTT 41674 ||| || || |||||||| || ||||| |||||||| ||| | || ||| | || Sbjct 2077957 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATT 2077898 Query 41675 GGACAGGGCTCTTTTTCTGATGCTA 41699 || || || |||||||||||||| Sbjct 2077897 GGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 158 bits (174), Expect = 4e-34 Identities = 218/305 (71%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 41402 TATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACAC 41461 ||||| ||||| || || || || ||| | |||| | | || |||||| | ||| Sbjct 24272537 TATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCGATCGGATTGCAC 24272596 Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTC 41521 || |||||||||||||||||||| | ||||||| ||| | ||||| ||||| || | Sbjct 24272597 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTAT 24272656 Query 41522 CAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAA 41581 | || | || | |||||| | |||| || | ||| ||||| | ||||||||| Sbjct 24272657 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAA 24272716 Query 41582 CTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCC 41641 ||||| | || || || ||| | || ||||| |||||| || || |||||||| || Sbjct 24272717 CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 24272776 Query 41642 GCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATG 41701 ||||| |||||||| ||| | || | || |||| || || ||||||||||||||| Sbjct 24272777 GCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTATA 24272836 Query 41702 CCCTT 41706 |||| Sbjct 24272837 GCCTT 24272841 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 2e-11 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 || |||||| || ||||| ||||||||||| ||||||||||| | |||||||||||||| Sbjct 8140971 AGGGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGC 8141030 Query 41974 TAGCTTTAATAATTCCCG 41991 ||| || || || || || Sbjct 8141031 TAGTTTCAACAACTCTCG 8141048 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146200183208352