Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq2 214 5e-51 seq8 120 9e-23 seq4 113 1e-20 >seq2 Length=61504503 Score = 214 bits (236), Expect = 5e-51 Identities = 339/479 (71%), Gaps = 9/479 (2%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || || |||||| | ||| || | ||||||||||| | || ||||| Sbjct 2078352 TGGGGTCGCTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTC 2078293 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| ||||||||| Sbjct 2078292 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCA 2078235 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 | ||||||||||| ||||| |||||||| |||||||| ||||| ||||| ||| | || | Sbjct 2078234 TCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTT 2078175 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || |||||||||||| | | |||| | || || ||| | || | Sbjct 2078174 ATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACT 2078115 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| || ||| | ||||||||||| |||||| Sbjct 2078114 TTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATG 2078055 Query 42578 AGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAAC 42637 |||| | || | |||||| | | ||| | | ||| |||| || || ||||||| Sbjct 2078054 AGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAAC 2077995 Query 42638 TTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTG 42697 || | ||| || || ||| | || ||||| |||||| || || || ||||| || | Sbjct 2077994 TTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAG 2077935 Query 42698 CAGCGACTGCAG---TCTTCCTTG--TCTATCCATTTGGGCAAGGTTCTTTTTCAGATG 42751 | || ||||| | |||| ||| |||| | |||| ||||| |||||| |||| Sbjct 2077934 CTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATG 2077876 >seq8 Length=47074253 Score = 120 bits (132), Expect = 9e-23 Identities = 145/195 (74%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 42289 TTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTTGGTGTGCTG 42348 || ||||||||| | | | || | ||||||||||| | || ||||| ||||| || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 42349 ATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCATTGCTGCCCC 42407 |||| ||||| || | | | || || || |||||| |||| ||||| ||||| || Sbjct 5860655 ATGA-TCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 5860597 Query 42408 TCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTATGGCAACAA 42467 ||| ||||| |||||||| |||||||| ||||| | ||| ||| | || ||||| || || Sbjct 5860596 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAA 5860537 Query 42468 CATCATCTCTGGTGC 42482 || |||||||||| Sbjct 5860536 TATTGTCTCTGGTGC 5860522 >seq4 Length=49548238 Score = 113 bits (124), Expect = 1e-20 Identities = 211/310 (68%), Gaps = 0/310 (0%) Strand=Plus/Plus Query 42442 TCTGGCTCTCTTCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAAC 42501 ||||| ||| | || ||||| ||||| || |||||||||||| | | |||| | Sbjct 24272522 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA 24272581 Query 42502 GCAATTGGACTACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTAC 42561 || || ||| | || || || | || |||||||| | |||| || ||| | ||| Sbjct 24272582 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 24272641 Query 42562 AATGGCGGACCTTATCAGCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTG 42621 |||||||| |||||| |||| | || | |||||| | | ||| | | ||| || Sbjct 24272642 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 24272701 Query 42622 GGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTAC 42681 || | || ||||||||| | ||| || || ||| | || ||||| |||||| || Sbjct 24272702 GGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 24272761 Query 42682 TCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCT 42741 || || ||||| || || || ||||| || ||| | | | || |||| ||||| | Sbjct 24272762 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGT 24272821 Query 42742 TTTTCAGATG 42751 ||||| |||| Sbjct 24272822 TTTTCTGATG 24272831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143518843947024