Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq2 205 3e-48 seq4 127 6e-25 seq8 95.1 4e-15 >seq2 Length=61504503 Score = 205 bits (226), Expect = 3e-48 Identities = 323/460 (70%), Gaps = 7/460 (2%) Strand=Plus/Plus Query 26397 CATCACTAAAACTCCCTTGTCCGAAAGGATA-----AACTAAGAACACTGCGAGAGCTGC 26451 ||||| |||||| ||||| || | || ||| || ||||| || || ||| || Sbjct 2077876 CATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGCAGC 2077935 Query 26452 GGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAG 26511 | | || |||| |||||||||| ||||| || | ||| || || | | || || Sbjct 2077936 TGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAG 2077995 Query 26512 TTCCCACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTG 26571 |||||||| | || ||| ||||| || | ||||||||| | | ||| || | Sbjct 2077996 TTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTC 2078055 Query 26572 ATATGGTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAA 26631 ||| || ||||||||||||| |||||| || | | |||||||||| || |||||||| Sbjct 2078056 ATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAA 2078115 Query 26632 ATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTA 26691 || | |||||| || ||| | || | | || || || || ||||||||||| || Sbjct 2078116 GTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATA 2078175 Query 26692 CATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGAT 26751 | ||| || || ||||| |||||||| || ||||| |||||||| || || || ||||| Sbjct 2078176 AAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGAT 2078235 Query 26752 GAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATAAGCACCCCGA 26810 ||| || | ||||| ||| | ||| || | | |||| || ||||| | || |||| Sbjct 2078236 GAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCGA 2078294 Query 26811 ACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCA 26850 ||||||| | || |||||||| || || || || | ||| Sbjct 2078295 ACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCA 2078334 >seq4 Length=49548238 Score = 127 bits (140), Expect = 6e-25 Identities = 214/310 (69%), Gaps = 0/310 (0%) Strand=Plus/Minus Query 26397 CATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATA 26456 ||||| |||||| ||||| || | ||| | || ||||| || || ||| || | | Sbjct 24272831 CATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAA 24272772 Query 26457 GTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCC 26516 || |||| |||||||||| ||||| || | ||| || || | | || ||||||| Sbjct 24272771 CAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCC 24272712 Query 26517 ACTGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATG 26576 ||| || ||| ||||| || | ||||||||| | | ||| || | ||| | Sbjct 24272711 ACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAG 24272652 Query 26577 GTCCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTA 26636 | ||||||||||||| |||||| || | | |||||||||| || |||||||| || | Sbjct 24272651 GGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCA 24272592 Query 26637 GTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTA 26696 |||||| || ||| | || | | || || || || ||||||||||| || | || Sbjct 24272591 ATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTA 24272532 Query 26697 ACGAGCCGGA 26706 | || || || Sbjct 24272531 AAGAACCAGA 24272522 >seq8 Length=47074253 Score = 95.1 bits (104), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 26678 ATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACA 26737 ||||| ||||| || | ||| || || |||| |||||||| || ||||| |||||||| Sbjct 5860534 ATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACGAATACCATCAATATCTACT 5860593 Query 26738 GGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTGGCTGCGAGTAAGCAGGGTATC 26797 || || || ||||||||||| | ||||| | ||| || | | |||| || ||| Sbjct 5860594 GGAGGAGCAGCGATGAAGGCGATAATAAATACGGAAGTTGCGGTCAATAAGGTAGGGATC 5860653 Query 26798 ATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAA 26857 || | || || |||||||| | || |||||||| || || || | | ||| | ||| Sbjct 5860654 ATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCGGTGCTACTTATCCAGTTACAG 5860713 Query 26858 AA 26859 || Sbjct 5860714 AA 5860715 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147697637592960