Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq2 246 4e-60 seq4 170 2e-37 seq8 116 4e-21 >seq2 Length=61504503 Score = 246 bits (272), Expect = 4e-60 Identities = 338/471 (72%), Gaps = 11/471 (2%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 ||||| | ||| ||||| | || ||||| | || |||| |||||||||||| | | Sbjct 2078342 TCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGA 2078283 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||| ||||| |||| Sbjct 2078282 TGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTC 2078223 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| ||||||||||||||||| || || ||||||||||| | ||||| ||||| | Sbjct 2078222 CAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATA 2078163 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | ||||||||||| || | |||| ||| || || || | ||||| || || |||| Sbjct 2078162 TTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTT 2078103 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| || ||||||||||||| |||||||| || |||| | || | || Sbjct 2078102 GGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTC 2078043 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | |||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 2078042 TACACTTCTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | ||||| | Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 155387 CTGTATTCCTTGTT-----TATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 155432 |||| ||| | || ||| || | |||||||| ||| |||||||| Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 >seq4 Length=49548238 Score = 170 bits (188), Expect = 2e-37 Identities = 232/321 (72%), Gaps = 7/321 (2%) Strand=Plus/Plus Query 155123 CTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACG 155182 ||||||||||| | ||||| ||||| || ||||||||||| || | |||| ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 155183 CAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACA 155242 | || || | ||||| || || ||||||||||| ||| || ||||||||||||| |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 155243 ATGGTGGTCCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT- 155301 |||| || |||| | || | || | |||||| | | || | ||| | | | Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT---AGCTTGTTATA 24272699 Query 155302 --GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCAT 155359 |||| | ||||||||||| || |||||| || |||||||||||||| |||||||| Sbjct 24272700 TGGGTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCAT 24272759 Query 155360 ACTCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTT 155419 | || || || || | ||||| ||||| ||| | || | ||| | |||||||| Sbjct 24272760 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAA 24272819 Query 155420 CTTTCTCTGATGCGAT-GCCT 155439 ||| |||||||| || |||| Sbjct 24272820 GTTTTTCTGATGCTATAGCCT 24272840 >seq8 Length=47074253 Score = 116 bits (128), Expect = 4e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || |||| ||||| |||||| | ||||||||| | | | | || Sbjct 5860691 GAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGACCGCA 5860632 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| |||||||||| ||||| ||||| ||||| ||||||||||||||| Sbjct 5860631 ACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 5860572 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTT 155166 || || || |||||||||| | ||||| || || || ||||||||||| || Sbjct 5860571 GAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584775342117280