Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq2 235 2e-57 seq4 140 9e-29 >seq2 Length=61504503 Score = 235 bits (260), Expect = 2e-57 Identities = 347/486 (71%), Gaps = 8/486 (2%) Strand=Plus/Plus Query 41037 ATTCCTAAAGGCA-TACCATCAGAGAAAGAACCCTGACC----GAAT-GGATAAACTAAG 41090 ||| |||||||| || ||||||| ||| || ||||| |||| || | || ||| Sbjct 2077859 ATTTCTAAAGGCTGTAGCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAG 2077918 Query 41091 AATACAGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATA 41150 || ||||| ||| |||| | ||||||| ||||| ||| ||||| || | |||| Sbjct 2077919 AAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATA 2077978 Query 41151 CCTAGTCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAG 41210 || || | | | ||||||||||| | ||| || ||||| || | ||| ||| Sbjct 2077979 CCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGTAAGAAG 2078038 Query 41211 TGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCT 41270 || | ||||| || | ||| || ||||| ||||||| |||||| || | | | ||| Sbjct 2078039 TGTAGAACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCT 2078098 Query 41271 TCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGAT 41330 ||||| |||||||| || || | |||||| || ||| | |||| | || ||||| Sbjct 2078099 TCCCAAATTGGGTAAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAG 2078158 Query 41331 ATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCT 41390 ||||||||||| || || | ||| || || ||||| |||||||| || ||||| |||||| Sbjct 2078159 ATAATATTGTTTCCATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCT 2078218 Query 41391 ACAGGCGGTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGG 41449 || || || || ||||| || ||||| || || ||| | || || || | ||| | || Sbjct 2078219 ACTGGAGGGGCAGCGATGAAAGCGATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGG 2078277 Query 41450 AATCATTAGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTT 41509 ||||| | ||||| ||||| || | ||| || ||||| ||||||||||| | |||||| Sbjct 2078278 GATCATCAAAACACCGAACCATCCGATGTAAAGACGGTTTTCGGTGCTAGTTATCCAGTT 2078337 Query 41510 ACAAAA 41515 || || Sbjct 2078338 GCAGAA 2078343 >seq4 Length=49548238 Score = 140 bits (154), Expect = 9e-29 Identities = 228/327 (70%), Gaps = 1/327 (0%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGC-ATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATAC 41095 ||| |||||||| ||| ||||||| ||| || ||||| | || | || ||||| || Sbjct 24272848 ATTTCTAAAGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAAC 24272789 Query 41096 AGCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAG 41155 ||| ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 24272788 AGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAG 24272729 Query 41156 TCTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAA 41215 | | | ||||||||||| ||| || ||||| || | ||| ||||| | Sbjct 24272728 ACGGAAACTAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAG 24272669 Query 41216 GACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCA 41275 ||||| || | ||| || ||||| ||||||| |||||| || | | | |||||||| Sbjct 24272668 AACAATTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCA 24272609 Query 41276 GATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAAT 41335 |||||||| || || | |||||| || ||| | |||| | || ||||| ||||| Sbjct 24272608 AATTGGGTAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAAT 24272549 Query 41336 ATTGTTCCCGTACATTAACGAGCCGGA 41362 |||||| || || | ||| || || || Sbjct 24272548 ATTGTTTCCATAAAGTAAAGAACCAGA 24272522 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143688427456392