Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq4 141 1e-28 >seq2 Length=61504503 Score = 205 bits (226), Expect = 1e-47 Identities = 304/430 (71%), Gaps = 11/430 (3%) Strand=Plus/Plus Query 67881 GCGTCAGAGAAAGAACCTTGACCGAAAGGATAG-----ACCAAGAACACAGCGAATGCTG 67935 || ||||| ||| |||||||| | || |||| | |||||| ||||| || | Sbjct 2077875 GCATCAGAAAAACTTCCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGCAG 2077934 Query 67936 CAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAA 67995 | | || ||||| || ||||| ||| ||||||||||||||||| |||||| || || Sbjct 2077935 CTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAA 2077994 Query 67996 GTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAA 68052 ||||||||| |||||| | | | ||| | || | | |||||| | || | | Sbjct 2077995 GTTCCCACTCACGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAATTA 2078051 Query 68053 GTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGAT 68112 | | |||| || ||||| || ||||||||||| | || ||| |||||||| || || | Sbjct 2078052 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 2078111 Query 68113 AGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTAC 68172 | ||||| | ||||| || ||| |||||| || |||||||| || || ||||| | Sbjct 2078112 AAAAGTGCAATCCGATCGCCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 2078171 Query 68173 CGTACATGAGCGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTG 68232 | || | | ||||| | |||||| || | |||||||| ||||| |||||||| || | Sbjct 2078172 CATAAAGTAAAGAACCAGAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAG 2078231 Query 68233 CAATGAATGCAATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACAC 68292 | ||||| || || || || || | ||| | | ||| ||| |||||||| |||| Sbjct 2078232 CGATGAAAGCGATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACAC 2078291 Query 68293 CGAACCAACC 68302 ||||||| || Sbjct 2078292 CGAACCATCC 2078301 >seq4 Length=49548238 Score = 141 bits (156), Expect = 1e-28 Identities = 217/307 (71%), Gaps = 7/307 (2%) Strand=Plus/Minus Query 67874 AGGC-ATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATG 67932 |||| || || ||||| ||| |||||||| | ||| | | |||||| ||||| | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 67933 CTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAG 67992 | || | || ||||| || ||||| ||| ||||||||||||||||| |||||| || Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 67993 AAAGTTCCCACTGACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTA 68049 ||||||||||| | |||| | | | ||| | || | | |||||| | || | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCT---ACACCAAGTAAGAAGTGTAGAACAA 24272664 Query 68050 CAAGTTGGAAAGGTCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAG 68109 || | |||| || ||||| || ||||||||||| | || ||| |||||||| || | Sbjct 24272663 TTAGCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTG 24272604 Query 68110 GATAGAAGTGAAGACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGT 68169 | || ||||| | ||||| || ||| |||||| || |||||||| || || |||| Sbjct 24272603 GGTAAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGT 24272544 Query 68170 TACCGTA 68176 | || || Sbjct 24272543 TTCCATA 24272537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566889172954080