Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021072.1 Length=178807 Score E Sequences producing significant alignments: (Bits) Value seq2 280 2e-70 seq4 174 2e-38 seq8 127 2e-24 seq7 87.8 2e-12 >seq2 Length=61504503 Score = 280 bits (310), Expect = 2e-70 Identities = 339/456 (74%), Gaps = 9/456 (2%) Strand=Plus/Plus Query 68377 CCTTGACCGAAAGGATAG-----ACCAGGAAGACTGCGGATGCTGCTGCAACAGGTGCAG 68431 |||||||| | || |||| | || ||| || || | || ||||||||||| || | Sbjct 2077890 CCTTGACCAATAGAATAGGGTCAATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTG 2077949 Query 68432 AGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGGAAAGTTCCCATTCACGTC 68491 | ||||||||| ||||||||||||||||| ||||| | ||||||||| ||||| | Sbjct 2077950 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 2078009 Query 68492 CCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGAGTTGGAAAGGACCACCAT 68551 |||| || | | ||||| | |||||| | | | || | |||| || |||| Sbjct 2078010 CCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGGCCGCCAT 2078069 Query 68552 TGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGATAAAAGTGAAGACCAATTG 68611 |||| ||||||||||||| | ||| ||||||||||| || |||||||| | || || | Sbjct 2078070 TGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGTAAAAGTGCAATCCGATCG 2078129 Query 68612 CATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAG 68671 | ||| |||||| || |||||||| || || ||||| ||||| || | ||||||| Sbjct 2078130 CCGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTCCATAAAGTAAAGAACCAG 2078189 Query 68672 CAACAGGTTCACGAATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGA 68731 |||||| |||||||||||||| || || || || || ||||||||||| |||| || | Sbjct 2078190 AAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCGATGAAAGCGATAATAA 2078249 Query 68732 A-ACAGATGGTTGCTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTA 68789 | ||||| ||||| | ||| || ||||||||||||| || |||||||| || | ||| Sbjct 2078250 ATACAGA-AGTTGCGGTCAATAAG-GTAGGGATCATCAAAACACCGAACCATCCGATGTA 2078307 Query 68790 AAGGCGGTTCTCTGTGGAAGTCACCCATTCGCAGAA 68825 ||| ||||| || ||| ||| | ||| | |||||| Sbjct 2078308 AAGACGGTTTTCGGTGCTAGTTATCCAGTTGCAGAA 2078343 >seq4 Length=49548238 Score = 174 bits (192), Expect = 2e-38 Identities = 230/318 (72%), Gaps = 1/318 (0%) Strand=Plus/Minus Query 68355 AGGC-ATTGCGTCAGAGAACGAACCTTGACCGAAAGGATAGACCAGGAAGACTGCGGATG 68413 |||| || || ||||| || |||||||| | ||| | | || ||| || || | | Sbjct 24272840 AGGCTATAGCATCAGAAAAACTTCCTTGACCAATAGGGTCAATCAAGAAAACAGCAGTAG 24272781 Query 68414 CTGCTGCAACAGGTGCAGAGTATGCAACACAGATCCAAGGACGCATACCAAGACGATAGG 68473 | ||||||||||| || || ||||||||| ||||||||||||||||| ||||| | Sbjct 24272780 CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAAC 24272721 Query 68474 AAAGTTCCCATTCACGTCCCATGTATGCAAAGATACCAATCAGGAAGTGAAAGATTACGA 68533 ||||||||| ||| | ||||| || | | ||||| | |||||| | | | | Sbjct 24272720 TAAGTTCCCACTCATGACCCATATAACAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24272661 Query 68534 GTTGGAAAGGACCACCATTGTACAACCACTCATCAAGGGTTGCTGCTTCCCAAATGGGAT 68593 | | |||| || |||||||| ||||||||||||| | ||| ||||||||||| || | Sbjct 24272660 GCTCATAAGGGCCGCCATTGTATAACCACTCATCAACAGATGCAGCTTCCCAAATTGGGT 24272601 Query 68594 AAAAGTGAAGACCAATTGCATTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTAC 68653 ||||||| | || || || ||| |||||| || |||||||| || || ||||| | Sbjct 24272600 AAAAGTGCAATCCGATCGCTGCAGAAGTAGGAATAATGGCACCAGAGATAATATTGTTTC 24272541 Query 68654 CATACAGAAGTGAACCAG 68671 |||| || | ||||||| Sbjct 24272540 CATAAAGTAAAGAACCAG 24272523 >seq8 Length=47074253 Score = 127 bits (140), Expect = 2e-24 Identities = 141/183 (77%), Gaps = 4/183 (2%) Strand=Plus/Plus Query 68625 AACAACAGCACCAGAAATGATGTTGTTACCATACAGAAGTGAACCAGCAACAGGTTCACG 68684 || || ||||||||| | || || || ||||| || | |||||| |||||| ||||| Sbjct 5860515 AATAATAGCACCAGAGACAATATTATTTCCATAAAGTAAAGAACCAAAAACAGGCTCACG 5860574 Query 68685 AATACCATCGATGTCCACAGGGGGAGCAGCGATGAAGGCGACGATGAA-ACAGATGGTTG 68743 ||||||||| || || || || ||||||||||||||||||| || || || || |||| Sbjct 5860575 AATACCATCAATATCTACTGGAGGAGCAGCGATGAAGGCGATAATAAATACGGA-AGTTG 5860633 Query 68744 CTG-CAAGCAGCGTAGGGATCATCAGGACGCCGAACCAACCAACGTAAAGGCGGTTCTCT 68802 | | ||| || ||||||||||||| || || ||||| || | |||||| ||||| || Sbjct 5860634 CGGTCAATAAG-GTAGGGATCATCAAAACACCTAACCATCCGATGTAAAGACGGTTTTCG 5860692 Query 68803 GTG 68805 ||| Sbjct 5860693 GTG 5860695 >seq7 Length=46770411 Score = 87.8 bits (96), Expect = 2e-12 Identities = 69/82 (84%), Gaps = 2/82 (2%) Strand=Plus/Minus Query 35501 AATCATATAACTCCCCAGGTAGGATTTGAACCTACGACCAATCGATTAACAGTCGATAGC 35560 ||||| || ||||||| |||||||| ||||||||||||| || ||||||| ||| || Sbjct 7252044 AATCAAAT--CTCCCCAAGTAGGATTCGAACCTACGACCAGTCAGTTAACAGCCGACCGC 7251987 Query 35561 TCTGCCGCTGAGCTACTGAGGA 35582 ||| || ||||||||||||||| Sbjct 7251986 TCTACCACTGAGCTACTGAGGA 7251965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571995850232160