Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021246.1 Length=281182 Score E Sequences producing significant alignments: (Bits) Value seq211 93.3 8e-14 seq7 93.3 8e-14 >seq211 Length=21435 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | |||| ||| || ||||| ||||| | || || | | Sbjct 1270 CGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCA 1211 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||||||||| || | ||||| || ||||| || ||||| ||||| Sbjct 1210 TCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 1151 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || || || |||||| || |||||||| Sbjct 1150 TCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTTATG 1091 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || |||||||| |||||| Sbjct 1090 GTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 1055 >seq7 Length=46770411 Score = 93.3 bits (102), Expect = 8e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 193146 CGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCGGATAACGTTCTAGAA 193205 || || |||| || | |||| ||| || ||||| ||||| | || || | | Sbjct 21031301 CGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCA 21031360 Query 193206 TCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGAGGTATTCCTTCTTTA 193265 || || | || ||||||||||| || | ||||| || ||||| || ||||| ||||| Sbjct 21031361 TCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 21031420 Query 193266 TCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCAACTTCTAGAGTTATA 193325 || || || || | || | ||| ||| || || || |||||| || |||||||| Sbjct 21031421 TCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTTATG 21031480 Query 193326 GTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361 || || || || || || || |||||||| |||||| Sbjct 21031481 GTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 21031516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 899562320372160