Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq211 95.1 2e-14 seq7 95.1 2e-14 >seq211 Length=21435 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| || || | || || || | ||||| |||||| |||||| |||||| Sbjct 1513 ATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCA 1454 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||||| || |||| |||| || || ||||||||||| | || ||| || || ||| Sbjct 1453 GCTAATGTCCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATGATTCGCTGCTGGTCCGGT 1394 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | || || || Sbjct 1393 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTCTCG 1334 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||| || | ||| |||||||| Sbjct 1333 ACCTCGAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 1284 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| || || | || || || | ||||| ||| || |||||| || ||| Sbjct 1285 ATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 1226 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || |||||||| | ||||| || |||||| Sbjct 1225 GCCAAAGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGT 1166 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || || || || ||||| || | || || || Sbjct 1165 GGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 1106 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||||| || ||||| | || || | ||||||||||||| Sbjct 1105 ACCTCAAGAGTTATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 1055 >seq7 Length=46770411 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| || || | || || || | ||||| |||||| |||||| |||||| Sbjct 21031058 ATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCTTTCTGGATATTGTAATCA 21031117 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | |||||| || |||| |||| || || ||||||||||| | || ||| || || ||| Sbjct 21031118 GCTAATGTCCGCCCATCCTCCAGCTGCTTTCCAGCAAAGATGATTCGCTGCTGGTCCGGT 21031177 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || || || || || || || || || ||||| || | || || || Sbjct 21031178 GGGATGCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATTGTGTCAGAGCTCTCG 21031237 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || ||||| | ||| || | ||| |||||||| Sbjct 21031238 ACCTCGAGCGTGATAGTCTTCCCAGTAAGTGTCTTCACAAAGATCTGCAT 21031287 Score = 93.3 bits (102), Expect = 8e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || |||| || || | || || || | ||||| ||| || |||||| || ||| Sbjct 21031286 ATCCCTCCTCGGAGGCGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCA 21031345 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || || |||||||| | ||||| || |||||| Sbjct 21031346 GCCAAAGTACGGCCATCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGT 21031405 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| || || || || || ||||| || | || || || Sbjct 21031406 GGGATTCCCTCTTTGTCCTGAATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 21031465 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATT 192537 || || ||||| ||||| || ||||| | || || | ||||||||||||| Sbjct 21031466 ACCTCAAGAGTTATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 21031516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984376719433800