Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4 129 2e-24 seq6 111 5e-19 seq1 111 5e-19 seq3635 104 7e-17 seq9 100 8e-16 seq5 98.7 3e-15 seq3 84.2 6e-11 >seq4 Length=49548238 Score = 129 bits (142), Expect = 2e-24 Identities = 346/513 (67%), Gaps = 22/513 (4%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| | |||| | | ||| || | || || || || |||| ||| || || Sbjct 3676915 CTGTCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCA 3676856 Query 288910 GCCAATACAACAATAGATTCG---GTTTGCTT-AAATCCATCCATACTTGTTAAAATTTG 288965 || |||| |||||| |||| |||| | | ||| |||||||| || || | ||| Sbjct 3676855 GC-AATA--ACAATA-ATTCCAGTGTTTCCCTCAAAACCATCCATTTCAGTCAACAGTTG 3676800 Query 288966 ATTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCtttt 289025 || || || || ||||||||||||||| ||| | ||| ||| | | | || || Sbjct 3676799 GTTGAGAGTCTGCTCCCTTTCATCATTTCCACCACC--AAT-ACCTGTACCTCT---TTG 3676746 Query 289026 tttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAAT 289085 ||||||||||||||||||| |||| || | | || |||| ||| | | || | Sbjct 3676745 CCTACCAACAGCATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTT 3676686 Query 289086 --TGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCA 289143 || ||| | || | || ||||| || |||| ||||||| |||| || ||||| ||| Sbjct 3676685 CTTGAAAAGA--TCACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCA 3676628 Query 289144 GAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAG 289202 || | || | |||| | |||| ||| || || || || | |||| | || || | Sbjct 3676627 GAGCCCGAAA-TTGAGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAA 3676569 Query 289203 TGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGC 289262 ||| ||||| ||||||||||| || | | ||||| || || || | || ||| | Sbjct 3676568 TGTTTTACCAGTTCCAGGTGGACCAACAAGAAGAACACCTTTAGGAATGCGAGCACCAAC 3676509 Query 289263 AGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATTTTG 289321 || | || | ||||| |||| || || || || | |||| | ||| || | |||| Sbjct 3676508 AGCAGTGAATCTTTCAGGCTTCTTCAAGAACTCGACCACTTCCATGAAG-TCTTGCTTTG 3676450 Query 289322 CCTCATCACATCCTGCTACATCAGCAAAAGTAA 289354 | |||||| || || |||||| |||| |||| Sbjct 3676449 CTTCATCAACGCCAGCAACATCATCAAATGTAA 3676417 Score = 102 bits (112), Expect = 2e-16 Identities = 155/220 (70%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 156049 TACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || || |||||||| ||||| ||||| |||||||| | ||||||||||| || Sbjct 46295690 TACCCTTTCTTTTGCCACCTCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTA 46295749 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 |||||||| ||| |||||||| || ||||| ||||| ||||| | |||| | | Sbjct 46295750 ACATAGGAACAATCCCATTGGACGTTCCATTTGTTCCCCGAATGTAACTCCCAGTAGCAC 46295809 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 | | ||| |||| | ||||| || || | |||| || ||| ||||||| Sbjct 46295810 GGATATTGTGAACTGAGACACCAATTCCTCCAGCTGATTTGCTTATCACAGCACATTCCT 46295869 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | | ||||| |||| || ||||| ||||||| ||| Sbjct 46295870 TCAGAGTATCATAAATTCCCTCAATGCTGTCATCTTTCAT 46295909 >seq6 Length=48101398 Score = 111 bits (122), Expect = 5e-19 Identities = 232/342 (68%), Gaps = 4/342 (1%) Strand=Plus/Plus Query 302538 ATTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACG 302597 ||||||||| || |||||| | ||| ||||| |||||| ||| | | | | Sbjct 3520189 ATTTCTTACAGTACCATCATATTTCACCATTATGTCCTCCATAGCCTTCACAAGTCTCCT 3520248 Query 302598 CTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACC 302657 ||| ||||| || || ||| || || ||||| ||||| || || || | | |||||| Sbjct 3520249 CTGGATATATCCTGTCTCAGAAGTCTTGACAGCAGTATCTATAAGCCCTTCTCTACCACC 3520308 Query 302658 CATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAA 302717 ||||||||| ||||| | || | ||| || || | || | || |||| || || Sbjct 3520309 CATAGCATGAAAGAAAAATTCCTGTGGTGTTAAGCCTCGAAGGTAAGAATTCTCCACAAA 3520368 Query 302718 ACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTC--TCA 302775 ||||| || || | ||| || ||||| ||||| || |||| | || | | Sbjct 3520369 TCCACGGCTTTCAGGACCAAAGTCATCTTTTGTAAAATGTGGAAGAGTCC-GATCAATGA 3520427 Query 302776 TAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGC 302835 | || ||||||| ||||| || ||||| ||||||||||| | || | | |||| || Sbjct 3520428 -AACCAAATGGGATCCGCTTGCCCTCAACATTCTGCTGTCCGACACATGCAGTCATTTGT 3520486 Query 302836 GAAATATTTAAATCACTGCCCTTGGAGCCAGCATTTACCATA 302877 ||||| || | |||||| || ||||| ||| | |||||| Sbjct 3520487 GAAATGTTAATGAAACTGCCTTTTGAGCCTGCAGTGACCATA 3520528 >seq1 Length=61571842 Score = 111 bits (122), Expect = 5e-19 Identities = 157/220 (71%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 156049 TACCATTCCTCTTGCC---ACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTA 156105 |||| || |||||||| ||| ||||| ||||| |||||||| | |||||| |||| || Sbjct 60058568 TACCTTTTCTCTTGCCTCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTA 60058509 Query 156106 GCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGC 156165 ||||||||| ||| ||||| ||||| ||||| ||||| ||||| | |||| | | Sbjct 60058508 GCATAGGAACAATTCCATTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTC 60058449 Query 156166 GAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCT 156225 ||| || ||||| || ||||| || || | |||| || ||| ||||| Sbjct 60058448 GAATGTTGTGAATTGATACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCTG 60058389 Query 156226 TTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 | ||||| |||| || |||||| |||||||| ||| Sbjct 60058388 AGAGAGTATCATAAATTCCCTCAATACTATCATCTTTCAT 60058349 >seq3635 Length=2119 Score = 104 bits (114), Expect = 7e-17 Identities = 214/315 (68%), Gaps = 4/315 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 ||| ||||| |||||| ||| | | | | ||| ||||| || || ||| || || Sbjct 20 CATTATGTCCTCCATAGCCTTCACAAGTCTCCTCTGGATATATCCTGTCTCAGAAGTCTT 79 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| ||||| || || || | | ||||||||||||||| ||||| | || | || Sbjct 80 GACAGCAGTATCTATAAGCCCTTCTCTACCACCCATAGCATGAAAGAAAAATTCCTGTGG 139 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | || || | || | || |||| || || ||||| || || | ||| Sbjct 140 TGTTAAGCCTCGAAGGTAAGAATTCTCCACAAATCCACGGCTTTCAGGACCAAAGTCATC 199 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCGTATGGGATACGCTTTCCATCA 302802 || ||||| ||||| || |||| | || || | || ||||||| ||||| || ||| Sbjct 200 TTTTGTAAAATGTGGAAGAGTCC-GATCA-ATGAAACCAAATGGGATCCGCTTGCCCTCA 257 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || ||||||||||| | || | | |||| || ||||| || | |||||| || ||| Sbjct 258 ACATTCTGCTGTCCGACACATGCAGTCATTTGTGAAATGTTAATGAAACTGCCTTTTGAG 317 Query 302863 CCAGCATTTACCATA 302877 || ||| | |||||| Sbjct 318 CCTGCAGTGACCATA 332 >seq9 Length=72259479 Score = 100 bits (110), Expect = 8e-16 Identities = 202/298 (68%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 251404 GCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGC 251463 || || |||||||| || | ||||||||||| ||||| |||||| |||| | ||| Sbjct 9929305 GCAATGAGACCACATTTCTCGCACACATGGACTCTGTATGCATCACTCTGGTCAAACAGC 9929364 Query 251464 CGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCG 251523 | |||| ||| || ||| || |||| |||||| ||||| | |||||||| || Sbjct 9929365 CTTTCCTTCAGAAAGAAAGCTGCTCCATGTGCAATCATGCAATCCCTTTCCATTTCTCCA 9929424 Query 251524 AAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATA 251583 || || ||||||||||| || | | ||||| || || || || ||||| | | | Sbjct 9929425 AAGCGGAGACCACCATCACGTGAACGCCCCTCTGCTGGTTGCCGGGTGAGTATCTGAACA 9929484 Query 251584 GGACCGATGGAGCGGCT--ATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGA 251641 ||||| || | | |||| ||| || | ||||| |||||||| | ||||| Sbjct 9929485 GGACC--ACGACCTCTTGAATGTATCTTGTCGTCCACCATGTGCTTGAGTCTTTGGTAAT 9929542 Query 251642 ATGCGGGACCGATGAAGATGCTCGAAGGCATTTGCTCTCCAGTTAGAGCGTTATACAT 251699 ||| |||||| | || || | | | || || | |||||| || | || ||||| Sbjct 9929543 ATGTGGGACCCAGAAAAATCATAGCTGTCAGTTTCCTTCCAGTGTGACCATTGTACAT 9929600 Score = 86.0 bits (94), Expect = 2e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 16271912 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 16271971 Query 409011 TAGAACAtttttttAAA 409027 || ||||||| |||| Sbjct 16271972 GGGAGCATTTTTGTAAA 16271988 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 7346085 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 7346144 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 7346145 GGGACCATTTTTTT 7346158 >seq5 Length=59822759 Score = 98.7 bits (108), Expect = 3e-15 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 156062 GCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACC 156121 |||||| ||||| ||||| ||||| || | ||||||||||| || |||||||| ||| || Sbjct 16576288 GCCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCC 16576229 Query 156122 ATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATG 156181 |||||| || ||||| ||||| ||||| | |||| | |||| ||| ||||| Sbjct 16576228 ATTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGA 16576169 Query 156182 TAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAAT 156241 | ||||| | || | ||||| || ||| |||||||| | |||| | || Sbjct 16576168 GACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGAT 16576109 Query 156242 ACCTTCAATAGAATCATCTTCCAT 156265 || ||||| ||||||| ||| Sbjct 16576108 TCCCTCAATGCTGTCATCTTTCAT 16576085 Score = 91.5 bits (100), Expect = 4e-13 Identities = 218/320 (68%), Gaps = 10/320 (3%) Strand=Plus/Minus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||| |||||||||| |||||||| | | || || | ||||| || | Sbjct 5775477 ACCAACTCCATCAATTTCATCAATGAATACAATACTAGGTGCGCATTGTCGAGCTTCTTG 5775418 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| | | || | ||||| ||||| ||||||| || | || || || || ||| | Sbjct 5775417 AAATAAGTTCCGCACCCTGGATGGTCCAACACCAACAAACCTCTCCACGAAATCTGAACC 5775358 Query 289149 GGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCT 289207 || | | || | || | |||| | || ||||| || | || || ||||| | Sbjct 5775357 AGAAA-TAGACAAAAAGGGAACATCAGACTCTCCTGCGGTGGCTTTAGCAAGGAGTGTTT 5775299 Query 289208 TACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCCAGCAGA-C 289266 | || || ||||| || ||| | | ||| | |||||||||| ||| || || ||| | Sbjct 5775298 TCCCCGTACCAGGGGGGCCCACAAGAAGAGCACCCTTTGGTATTTTAGCTCC--CAGTTC 5775241 Query 289267 TTA-TATTTCTCAGGGCTCTTTAA--AAATTCTACAATTTCCTCAAGTTCATATTTTGCC 289323 || ||||||| ||| | ||| | |||| | |||| |||| | ||| | ||| || Sbjct 5775240 TTCGTATTTCTT-GGGATTTTTCAGGAAATGC-ACAAATTCCATTATTTCTTGTTTCGCT 5775183 Query 289324 TCATCACATCCTGCTACATC 289343 ||||||||||| |||||||| Sbjct 5775182 TCATCACATCCAGCTACATC 5775163 >seq3 Length=64463019 Score = 84.2 bits (92), Expect = 6e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 18266520 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 18266461 Query 409011 TAGAACAttttttt 409024 || ||||||||| Sbjct 18266460 GGGAGCATTTTTTT 18266447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471663193455356