Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021530.1 Length=171407 Score E Sequences producing significant alignments: (Bits) Value seq2 223 4e-53 seq4 150 2e-31 >seq2 Length=61504503 Score = 223 bits (246), Expect = 4e-53 Identities = 334/472 (71%), Gaps = 7/472 (1%) Strand=Plus/Minus Query 157580 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 157639 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 157640 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 157698 ||||| || || | ||| | ||||| ||||| || || |||| ||| ||||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 157699 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 157758 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 157759 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 157818 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 157819 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 157878 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 157879 ATTTCACTTCCTCATTGGTATCTATGCATACATGGGACGTGAGTGGGAACTTTCATACCG 157938 | |||||| | ||||| | | || ||||| ||||||||||||||| | ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 157939 TTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCATCTGC 157998 | | |||||||| || ||||| ||| |||||||| ||||| || || || || |||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 157999 TGTATTCCTCGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158045 ||| ||| | | |||| || | |||||||| ||| || ||||||| Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 150 bits (166), Expect = 2e-31 Identities = 225/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 157734 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACG 157793 ||||||| | | ||||| ||||| || ||||||||||| || | || |||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 157794 CAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATA 157853 | || || | ||||| || || || |||||||| ||||| ||||||||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 157854 ACGGTGGTCCTTTCCAACTCGTAGTATTTCACTTCCTCATTGGTATCTATGCATACATGG 157913 | || || |||| | || | || | |||||| | ||||| | | || |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 157914 GACGTGAGTGGGAACTTTCATACCGTTTAGGTATGCGCCCCTGGATCTGTGTAGCATATT 157973 | | ||||||||||||| | |||| | |||||||| || ||||| ||| ||||||| Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 157974 CTGCTCCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTT 158033 | ||||| || || || || ||||||| ||| | | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 158034 TCTCCGATGCTAT-GCCT 158050 | || |||||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548318273880160