Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021536.1 Length=171797 Score E Sequences producing significant alignments: (Bits) Value seq2 260 2e-64 seq4 190 2e-43 seq8 95.1 1e-14 >seq2 Length=61504503 Score = 260 bits (288), Expect = 2e-64 Identities = 325/443 (73%), Gaps = 7/443 (2%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||||||||| ||||||| || || | ||| | ||||| Sbjct 2078316 AACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT 2078257 Query 150926 ATTTGCTTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGTGAA 150985 | || || | || ||||||||||| || || || || || ||||| || ||||| Sbjct 2078256 TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAG 2078197 Query 150986 CCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCT 151045 || ||| |||||||| | | || || ||||| || ||||||||||| || ||||| || Sbjct 2078196 CCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACT 2078137 Query 151046 TCTAACGCTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGG 151105 ||| || ||||| ||||||| || || || |||||||| || ||| | ||||| ||| Sbjct 2078136 TCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGG 2078077 Query 151106 CTCTACAACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCT 151165 | ||||| || || |||| | || |||| | |||||| | ||||| | | | Sbjct 2078076 TTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGT 2078017 Query 151166 TACATGGGTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GT 151224 || |||||||||||||||||||| || ||| ||||||||||||| ||||| ||| || Sbjct 2078016 TATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGT 2077958 Query 151225 TGCATACTCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGT-----CTATCCTTTC 151279 |||||| || ||||| ||||| ||||| | ||| || ||| | | |||| || | Sbjct 2077957 TGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATT 2077898 Query 151280 GGTCAAGGTTCTTTCTCTGATGC 151302 |||||||| ||| |||||||| Sbjct 2077897 GGTCAAGGAAGTTTTTCTGATGC 2077875 Score = 113 bits (124), Expect = 5e-20 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | ||||||||||||||| | || ||||| || Sbjct 2076789 TTTGATATTATGGACGACTGG-TTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGG 2076847 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTT 152477 || | || ||||| ||||||| | ||| | || |||||| |||| ||||||||||| Sbjct 2076848 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTT 2076907 Query 152478 CGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTA 152516 | || ||||||||| || || ||||| |||||||| Sbjct 2076908 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTA 2076946 >seq4 Length=49548238 Score = 190 bits (210), Expect = 2e-43 Identities = 232/314 (74%), Gaps = 2/314 (1%) Strand=Plus/Plus Query 150993 CTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTTCCTTCTTCTAACG 151052 |||||||| | | || || ||||| || ||||||||||| || ||||| ||||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 151053 CTATCGGTCTGCACTTCTATCCCATCTGGGAAGCAGCCTCTCTCGATGAATGGCTCTACA 151112 | ||||| ||||||| || || || |||||||| || ||| | ||||| ||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 151113 ACGGTGGTCCTTTCCAACTCGTTGTCTTCCACTTCCTGATTGGTATCTATGCTTACATGG 151172 | || || |||| | || |||| | |||||| | ||||| | | ||| |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 151173 GTCGTGAGTGGGAACTGTCTTACCGCTTGGGTATGCGTCCCTGGATCTGC-GTTGCATAC 151231 ||| |||||||||||| || ||| ||||||||||||| ||||| ||| |||||||| Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT-TGCTGTTGCATAT 24272761 Query 151232 TCTGCTCCAGTTGCTGCTGCGAGTGCAGTGTTCCTCGTCTATCCTTTCGGTCAAGGTTCT 151291 || ||||| ||||| ||||| | ||| || ||| | | | ||| | |||||||| | Sbjct 24272762 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGT 24272821 Query 151292 TTCTCTGATGCAAT 151305 || |||||||| || Sbjct 24272822 TTTTCTGATGCTAT 24272835 Score = 102 bits (112), Expect = 9e-17 Identities = 121/160 (76%), Gaps = 3/160 (2%) Strand=Plus/Minus Query 152359 TTTGATGTCCTGGATGACTGGCTTAAGA-GAGACCGTTTCGTTTTTGTTGGTTGGTCTGG 152417 |||||| | |||| |||||| ||| || | |||| |||||||||| | || ||||| || Sbjct 21863120 TTTGATATTATGGACGACTGG-TTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGG 21863062 Query 152418 ACTTCTTCTTTTTCCCACTGCTTATCTTGCTATT-GGCGGTTGGCTTACTGGGACTACTT 152476 || | || ||||| ||||||| | ||| | || |||||| |||| |||||||||| Sbjct 21863061 CCTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTT 21863002 Query 152477 TCGCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTA 152516 | | || ||||||||| || || ||||| |||||||| Sbjct 21863001 TTGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTA 21862962 >seq8 Length=47074253 Score = 95.1 bits (104), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 6/177 (3%) Strand=Plus/Minus Query 150866 AACCGTCTGTATGTCGGTTGGTTCGGTGTGCTGATGATTCCAACTCTGTTGGCAGCAACC 150925 |||||||| || |||| ||||| ||||| ||||||| || || | ||| | ||||| Sbjct 5860688 AACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGACCGCAAC- 5860630 Query 150926 ATTTGC---TTCATCGTGGCATTCATCGCTGCTCCCCCTGTGGACATCGATGGCATCCGT 150982 || | || || | || |||||||||||||| || || || || ||||| || ||| Sbjct 5860629 --TTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 5860572 Query 150983 GAACCCGTTGCTGGTTCTCTGATGTACGGTAACAACATCATCTCTGGTGCTGTTGTT 151039 || || ||| ||||||| | | || || || || || ||||||||||| || || Sbjct 5860571 GAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATTATT 5860515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 549566146147360