Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_021559.1 Length=179063 Score E Sequences producing significant alignments: (Bits) Value seq2 181 1e-40 seq4 120 3e-22 seq8 86.0 7e-12 >seq2 Length=61504503 Score = 181 bits (200), Expect = 1e-40 Identities = 285/405 (70%), Gaps = 5/405 (1%) Strand=Plus/Minus Query 72244 TGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCA 72303 ||| |||| ||| || || || | ||| | || ||||| ||||| || |||||||| Sbjct 2078334 TGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCC- 2078276 Query 72304 TGTCTTCTA-ACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGA 72362 | ||| | || || || || || ||| | || ||||||||||| |||||||| || Sbjct 2078275 TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGA 2078216 Query 72363 TATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTC 72422 ||| || || || | || || ||| | |||||||| | ||||| ||||| || ||||| Sbjct 2078215 TATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTC 2078156 Query 72423 TGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATCTGGGAAGC 72482 |||||| | |||| |||| || || ||||| ||||| || || || |||||||| Sbjct 2078155 TGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGC 2078096 Query 72483 AGCCACTATGGACGAGTGGTTGTATAACGGAGGTCCTTACCAGTTAGTTATTTTCCACTT 72542 || || | || |||||||| || || || || ||||| || || || || | ||||| Sbjct 2078095 TGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTT 2078036 Query 72543 CCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGACTAGGAAT 72602 | | |||| | || || |||||| | |||||||||| | | | || || || Sbjct 2078035 CTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTAT 2077976 Query 72603 GAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGC 72647 | | |||||||| ||| ||||| ||||| ||||| |||||| Sbjct 2077975 GCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGT---TGCAGC 2077934 Score = 93.3 bits (102), Expect = 5e-14 Identities = 110/148 (74%), Gaps = 1/148 (1%) Strand=Plus/Plus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || |||||||| || || |||||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTC 73483 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 73484 GTGACCTCATGGTACACACATGGTATTG 73511 || || || ||||| || ||||| |||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGG-ATTG 2076935 >seq4 Length=49548238 Score = 120 bits (132), Expect = 3e-22 Identities = 181/257 (70%), Gaps = 3/257 (1%) Strand=Plus/Plus Query 72391 GGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCA 72450 |||||||| | ||||| ||||| || ||||||||||| | |||| |||| || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 72451 ATAGGATTACACTTCTATCCCATCTGGGAAGCAGCCACTATGGACGAGTGGTTGTATAAC 72510 || ||||| ||||| || || || |||||||| || || | || |||||||| || || Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 72511 GGAGGTCCTTACCAGTTAGTTATTTTCCACTTCCTTATTGGAATCTCTGCCTACATGGGT 72570 || || ||||| || || || || | |||||| | |||| | || || |||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 72571 AGACAGTGGGAACTATCATACAGACTAGGAATGAGACCTTGGATATGTGTAGCATACTCA 72630 |||||||||| | | | || || ||| | |||||||| ||| ||||| ||| Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 72631 GCACCTGTATCTGCAGC 72647 || ||||| |||||| Sbjct 24272765 GCTCCTGT---TGCAGC 24272778 Score = 82.4 bits (90), Expect = 9e-11 Identities = 109/149 (73%), Gaps = 2/149 (1%) Strand=Plus/Minus Query 73364 TTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 73423 ||||| || | || || |||||| || || | |||||| || || |||||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 73424 CTTTTACTTTTACCTTGTGCTTACCTAGCAAT-CGGAGGTTGGTTCGTAGGAACTACTTT 73482 || || || || ||||||||||| | || | || |||||||| ||| |||||||| Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 73483 CGTGACCTCATGGTACACACATGGTATTG 73511 || || || ||||| || ||||| |||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGG-ATTG 21862973 >seq8 Length=47074253 Score = 86.0 bits (94), Expect = 7e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 72255 CACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTAATGATCCCATGTCTTCTA-A 72313 ||| || || || | ||| | || ||||| ||||| || |||||||| | ||| | | Sbjct 5860695 CACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCC-TACCTTATTGA 5860637 Query 72314 CTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCTCCAGTCGATATCGACGGAA 72373 | || || | || ||| | || |||||||||||||||||||| ||||| || || | Sbjct 5860636 CCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTA 5860577 Query 72374 TCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAACATCATCTCTGGTGCT 72429 | | || || ||| |||||||| | ||||| || || || ||||||||||| Sbjct 5860576 TTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCT 5860521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572814966387040