Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_022563.1 Length=148803 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 9e-16 >seq6 Length=48101398 Score = 98.7 bits (108), Expect = 9e-16 Identities = 132/181 (73%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 117495 GGTCTTCTTCGGCCCGCTCTACTACCTGCGGCTGCGCCACCTGACGCAGGACAAGGCCAC 117554 ||||||| |||||||| ||| ||||| ||||||| |||| || | ||||||||| | Sbjct 4214111 GGTCTTCATCGGCCCGATCTTCTACCAGCGGCTGACCCACATGTCCGAGGACAAGGTGAA 4214052 Query 117555 CGTCCGCTGC-CGGGGCAAGAAGACCAAGCTCATCCGGCAGGCCAACGAGGGCCGCAAGC 117613 ||||| | |||||| | ||| ||||| |||||| | |||| | |||| Sbjct 4214051 GTTCCGCAACACGGGGCCCGTGCACCC-GCTCACGCGGCAGCCGGTGGAGGACAAGAAGC 4213993 Query 117614 GCGGGGGCGGCATCAAGTTCGGGGAGATGGAGCGGGACTGCATCATCGCGCACGGCGCGG 117673 | || ||| |||||||||||||||||||||| |||||| || ||| || ||||| | Sbjct 4213992 GGTTCGGTGGCGTCAAGTTCGGGGAGATGGAGCGAGACTGCCTCCTCGGCCATGGCGCTG 4213933 Query 117674 C 117674 | Sbjct 4213932 C 4213932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475992877142240