Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq4347 100 2e-16 seq4 91.5 1e-13 seq1 86.0 5e-12 >seq4347 Length=1781 Score = 100 bits (110), Expect = 2e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||| ||||| ||| |||| |||| | | Sbjct 1012 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 1071 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 1072 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1131 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||||||||| | | || |||||||||||||| Sbjct 1132 CAGCGTCTGATCTTTGCAGGCAAGCAGCTGGAGGATGGCCGCACCCTGGCGGACTACAAC 1191 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 1192 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 1221 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| ||||| || || || | |||||||| ||||| ||| |||| |||| | | Sbjct 784 ATGCAGATTTTCGTTAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 843 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 844 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 903 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||||| | || | || ||||||||| Sbjct 904 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 963 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 964 ATCCAGAAGGAGAGCACCCTCCACCTGGTG 993 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| |||| |||| | | Sbjct 328 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 387 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 388 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 447 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 448 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCGGACTACAAC 507 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 508 ATCCAGAAGGAGAGCACTCTTCACCTGGTG 537 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || | |||||||| ||||| ||| | || |||| || | Sbjct 556 ATGCAGATCTTCGTTAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 615 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 616 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 675 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||| | | || | |||||||||||| Sbjct 676 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTACAAC 735 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 736 ATCCAGAAGGAGAGCACTCTCCACCTGGTG 765 >seq4 Length=49548238 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || | || |||| || Sbjct 2545218 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGTCTTCT 2545159 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2545158 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2545099 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||||| | || |||||||||||||| Sbjct 2545098 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACCCTGGCGGACTACAAC 2545039 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2545038 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 2545009 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || | || |||| || Sbjct 2544990 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGTCTTCT 2544931 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2544930 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2544871 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | | || |||||||||||||| Sbjct 2544870 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGCCGCACCCTGGCGGACTACAAC 2544811 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2544810 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 2544781 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || ||||| ||||| || | || |||| || Sbjct 2544762 ATGCAGATCTTTGTCAAGACCCTCACCGGCAAGACCATCACACTGGAGGTGGAGTCTTCT 2544703 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2544702 GACACCATCGACAACGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2544643 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | || || | ||| || || ||||| ||||| | || |||||||||||||| Sbjct 2544642 CAGCGTCTGATCTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACCCTGGCGGACTACAAC 2544583 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2544582 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 2544553 >seq1 Length=61571842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || || || || || || || ||||| ||||| ||| | || |||| || | Sbjct 2549592 ATGCAGATCTTCGTGAAGACCTTGACTGGCAAGACCATCACCCTTGAGGTGGAGTCTTCC 2549533 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 2549532 GACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 2549473 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| ||||| | || || || ||||| ||||| | ||| | || ||||||||| Sbjct 2549472 CAGAGGCTTATCTTCGCTGGCAAGCAGCTTGAGGATGGACGCACACTTGCTGACTACAAC 2549413 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||||| || | ||| ||||| Sbjct 2549412 ATCCAGAAGGAGTCCACCCTCCACCTGGTG 2549383 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || || || ||||| ||||| ||| |||| |||| | | Sbjct 3009649 ATGCAGATCTTTGTGAAGACCTTGACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 3009590 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 3009589 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3009530 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||||| | || | || ||||||||| Sbjct 3009529 CAGAGGCTCATCTTCGCTGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 3009470 Query 107736 ATTCAAAAGGAG 107747 || || |||||| Sbjct 3009469 ATCCAGAAGGAG 3009458 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| |||| |||| | | Sbjct 3010105 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 3010046 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 3010045 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3009986 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || ||||||||||| | | || | || ||||||||| Sbjct 3009985 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCAGACTACAAC 3009926 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 3009925 ATCCAGAAGGAGAGCACTCTCCACCTGGTG 3009896 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || || | || ||||| ||||| ||| |||| |||| | | Sbjct 3014960 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 3014901 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| || || || ||| | ||| ||| ||| Sbjct 3014900 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 3014841 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | || || || ||||||||||| | | || | |||||||||||| Sbjct 3014840 CAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACCCTTGCGGACTACAAC 3014781 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || || |||||| || | ||| ||||| Sbjct 3014780 ATCCAGAAGGAGAGCACTCTCCACCTGGTG 3014751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398836995585532