Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq211 122 7e-23 seq7 118 8e-22 seq4 116 3e-21 seq1 113 3e-20 >seq211 Length=21435 Score = 122 bits (134), Expect = 7e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| |||||| || | || || ||||| || || || |||||||| || || Sbjct 1055 TCCACCCCTCAGACGCAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 996 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || || ||||||||| | || | || ||||| ||||| || Sbjct 995 AAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGG 936 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| || || || ||| || | |||||| | || | ||||| || || | Sbjct 935 GATGCCCTCCTTATCCTG-AATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCCA 877 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| | ||| || |||||||||||||| Sbjct 876 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 828 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || || || || || || || || || || | || || | Sbjct 1270 CGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCA 1211 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | || ||||| || || || || ||||||||| Sbjct 1210 TCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 1151 Query 29692 TCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| |||||| | || | |||||||| || || ||||||||||| Sbjct 1150 TCCTG-AATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTTAT 1092 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | ||| || ||||||||||||||| Sbjct 1091 GGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 1055 >seq7 Length=46770411 Score = 118 bits (130), Expect = 8e-22 Identities = 165/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||||| ||| || || | || || ||||| || || || |||||||| || || Sbjct 21031516 TCCACCCCTCAGACGGAGGACAAGGTGGAGGGTGGACTCCTTCTGGATGTTATAGTCAGC 21031575 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 || || ||| ||| || || || ||||||||| | || | || ||||| ||||| || Sbjct 21031576 AAGCGTACGACCATCCTCAAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCCGGGGG 21031635 Query 29679 AATACCCTCTTTGTCTTGTAATTTTTGT-TTGACAGTTTCTACAGTGTCAGAAAGTTCTA 29737 || ||||| || || || ||| || | |||||| | || | ||||| || || | Sbjct 21031636 GATGCCCTCCTTATCCTG-AATCTTGGCCTTGACATTGTCGATGGTGTCGGAGCTCTCCA 21031694 Query 29738 CTTCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 | || || || || || || ||||| | ||| || |||||||||||||| Sbjct 21031695 CCTCCAGGGTGATGGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCAT 21031743 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || || ||||| ||||| || || || || || || || || || || | || || | Sbjct 21031301 CGGAGGACCAAGTGAAGAGTAGACTCCTTCTGGATATTGTAGTCAGCCAAAGTACGGCCA 21031360 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || || || ||| | || | || ||||| || || || || ||||||||| Sbjct 21031361 TCCTCAAGCTGCTTTCCGGCAAAGATGAGCCTCTGCTGGTCAGGTGGGATTCCCTCTTTG 21031420 Query 29692 TCTTGTAATTTTTG-TTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 || || ||| |||| |||||| | || | |||||||| || || ||||||||||| Sbjct 21031421 TCCTG-AATCTTTGCCTTGACATTGTCAATGGTGTCAGAGCTCTCAACCTCAAGAGTTAT 21031479 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || || ||||| | ||| || ||||||||||||||| Sbjct 21031480 GGTCTTCCCAGTGAGGGTCTTCACAAATATCTGCATT 21031516 >seq4 Length=49548238 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || || | || ||| ||||||| || || ||||| || || |||||||| || || || Sbjct 2204866 CCACCGCGCAGACGGAGCACCAGGTGGAGGGTGGACTCCTTCTGAATGTTGTAGTCAGCG 2204807 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | |||||| ||| ||||| || ||||||||| | || | || ||||| || || ||| Sbjct 2204806 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAGGA 2204747 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || || ||||| || | || ||||| | || | ||||| || || || Sbjct 2204746 ATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCAATTGTGTCCGAGGACTCAACC 2204687 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| ||||||||||||||||| Sbjct 2204686 TCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAATATCTGCAT 2204640 Score = 89.7 bits (98), Expect = 4e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 29559 TCCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGC 29618 ||| ||||| | | ||| ||||||||||| || || || || |||||||| ||||| || Sbjct 4633266 TCCACCCCTGAGCCTCAGGACCAAATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGC 4633325 Query 29619 AATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGG 29678 | || | ||| || | ||| || |||||| | |||| |||||||| || || || Sbjct 4633326 TAATGTTCTCCCATCTTCCAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGG 4633385 Query 29679 AATACCCTCTTTGTCTTGTAAT 29700 ||| ||||| ||||| || ||| Sbjct 4633386 AATGCCCTCCTTGTCCTGAAAT 4633407 >seq1 Length=61571842 Score = 113 bits (124), Expect = 3e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || ||||||||||| || || || || || || || || || || |||| |||||| | Sbjct 3014290 CGGAGCACCAAATGGAGGGTCGACTCCTTCTGGATATTGTAGTCAGCAAGGGTGCGGCCA 3014349 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||||||| | |||| | ||||| ||||| || || ||||| ||| Sbjct 3014350 TCCTCCAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTG 3014409 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || ||||| | || | ||||| || || || || || || || Sbjct 3014410 TCCTGGATCTTGGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCACCTCGAGGGTGATG 3014469 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || |||||||| ||||| ||||| || |||||||| Sbjct 3014470 GTCTTGCCAGTCAAGGTCTTAACGAAGATCTGCAT 3014504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 385180758494508