Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023549.1 Length=56789 Score E Sequences producing significant alignments: (Bits) Value seq9 80.6 1e-10 seq1 80.6 1e-10 >seq9 Length=72259479 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||||| | |||| ||| ||||||||| | |||||||| |||| Sbjct 49520393 TGCGGAGACGGGAATCGAACCCGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 49520334 Query 50172 GCTCTACTCCGC 50183 ||||||||| || Sbjct 49520333 GCTCTACTCTGC 49520322 >seq1 Length=61571842 Score = 80.6 bits (88), Expect = 1e-10 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 50112 TGCGGAGGCGGGATTTGAACCCGCGGCCTCCAGGATATGAGCCTGGCGAGCTACCGAACT 50171 ||||||| ||||| | ||||| | | |||| ||| ||||||||| | |||||||| |||| Sbjct 9327739 TGCGGAGACGGGAATCGAACCTGTGACCTCAAGGTTATGAGCCTCGTGAGCTACCAAACT 9327798 Query 50172 GCTCTACTCCGC 50183 |||||||||||| Sbjct 9327799 GCTCTACTCCGC 9327810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181585542266856