Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023587.1 Length=189311 Score E Sequences producing significant alignments: (Bits) Value seq2 217 2e-51 seq4 145 9e-30 >seq2 Length=61504503 Score = 217 bits (240), Expect = 2e-51 Identities = 334/473 (71%), Gaps = 9/473 (2%) Strand=Plus/Minus Query 177558 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 177617 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 177618 ATGATTCCAACTCTGTTGGCAGCAACTATCTGC-TTCATCGTCGCCTTCGTCGCTGCTCC 177676 ||||| || || | ||| | |||||| |||| || || |||| ||| ||||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 177677 CCCCGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 177736 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 177737 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 177796 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 177797 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 177856 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 177857 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAGTGGGAACTTTCATACCG 177916 | |||||| | | || | | |||||||| ||||||||||||||| | ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 177917 TCTAGGTATGCGCCCCTGGATCTGTGTTGCATACTCTGCACCTGTTGCAGCAGCATCCGC 177976 ||| |||||||| || ||||| ||||||||| || || ||||||||||| || | || Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 177977 AGTCTTTCT------AGTCTATCCTTTCGGTCAAGGTTCATTCTCCGATGCTA 178023 || ||||| | |||| || | |||||||| || || ||||||| Sbjct 2077924 TGT-TTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 145 bits (160), Expect = 9e-30 Identities = 226/319 (71%), Gaps = 3/319 (1%) Strand=Plus/Plus Query 177712 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACG 177771 ||||||| | | ||||| ||||| || ||||||||||| || | || |||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 177772 CAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATA 177831 | || || | ||||| || || || |||||||| ||||| ||||||||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 177832 ACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGG 177891 | || || |||| | || | || | |||||| | | || | | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 177892 GACGTGAGTGGGAACTTTCATACCGTCTAGGTATGCGCCCCTGGATCTGTGTTGCATACT 177951 | | ||||||||||||| | |||||| |||||||| || ||||| ||||||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 177952 CTGCACCTGTTGCAGCAGCATCCGCAGTCTTTCTAG-TCTATCCTTTCGGTCAAGGTTCA 178010 | || ||||||||||| || | || || ||||| | | | ||| | |||||||| Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGT-TTTCTTGATTGACCCTATTGGTCAAGGAAGT 24272821 Query 178011 TTCTCCGATGCTAT-GCCT 178028 || || |||||||| |||| Sbjct 24272822 TTTTCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605605209962080