Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023611.1 Length=198533 Score E Sequences producing significant alignments: (Bits) Value seq9 91.5 2e-13 seq3635 82.4 1e-10 seq6 82.4 1e-10 >seq9 Length=72259479 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/164 (74%), Gaps = 3/164 (2%) Strand=Plus/Minus Query 193433 TCAGTTACGTATACCTGAAATAGGGGATAAATTTTGTTC-AGGAATGGCCCAAAAAGGAA 193491 |||||| || ||||| |||| || || || ||| | ||| |||| | ||||||||| Sbjct 9930113 TCAGTT-CGCATACCACAAATTGGAGACAAGTTTAGCAGTAGGCATGGAC-AAAAAGGAA 9930056 Query 193492 CTTGTGGTATGATTTATTCACAAGAAGATATGCCATTTACAGCTTCAGGTATGGTACCAG 193551 || ||| |||| ||| ||||||| || ||||||| ||| | ||| || ||| | Sbjct 9930055 CTGTTGGGATGACTTACACACAAGAGGACATGCCATGGACAATTGAAGGCATCACACCTG 9929996 Query 193552 ATATTATTATTAATCCAAATTGTATTCCATCCAGAATGACCATT 193595 |||||||| | |||||| || |||||||||| | ||||| ||| Sbjct 9929995 ATATTATTGTGAATCCACATGCTATTCCATCCCGTATGACTATT 9929952 >seq3635 Length=2119 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||| ||| || | ||| | |||| |||||||||||||||||||||||||||||| | | Sbjct 1477 TGAACTTGTCTGTCACTTCACCATACAATGCTGATTTTGATGGGGATGAAATGAATATGC 1418 Query 52027 ATGTTCCTCAATCATATG 52044 |||| ||||| |||| || Sbjct 1417 ATGTCCCTCAGTCATTTG 1400 >seq6 Length=48101398 Score = 82.4 bits (90), Expect = 1e-10 Identities = 65/78 (83%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 51967 TGAATTTGGCTATGACTAAAGCATATAATGCTGATTTTGATGGGGATGAAATGAATTTAC 52026 |||| ||| || | ||| | |||| |||||||||||||||||||||||||||||| | | Sbjct 3521673 TGAACTTGTCTGTCACTTCACCATACAATGCTGATTTTGATGGGGATGAAATGAATATGC 3521614 Query 52027 ATGTTCCTCAATCATATG 52044 |||| ||||| |||| || Sbjct 3521613 ATGTCCCTCAGTCATTTG 3521596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635112589572640