Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq9 217 1e-50 seq3 111 1e-18 seq8 91.5 1e-12 seq6 87.8 1e-11 >seq9 Length=72259479 Score = 217 bits (240), Expect = 1e-50 Identities = 564/852 (66%), Gaps = 16/852 (2%) Strand=Plus/Plus Query 281633 GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCA 281692 ||||| || ||||| || ||||| |||||| | || ||||| ||||| | |||| Sbjct 1713442 GGAATGGTGGTGTTCCTTGGAATAAGGACGGTCATGACTCCTCCAGCAGTTTCAAGACCA 1713501 Query 281693 AGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCA 281752 ||||| | || || ||||||| |||| || | || | || |||| | |||| Sbjct 1713502 AGAGACAATGGGGTCACATCAAGGAGGAGAAGGTCCTGCACCTTCTCATTGCCCTCACCA 1713561 Query 281753 ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCAGGATTAA--CAG 281810 ||| ||||| || |||| ||||| ||||| |||||||||||||||||||| | | Sbjct 1713562 CTAAGGATAGCAGCCTGAACAGCAGTGCCATAGGCAACAGCTTCATCAGGATTGATGCTC 1713621 Query 281811 TTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATAC 281870 || || |||| || |||||||| || | || || || || || || || | Sbjct 1713622 TTGCAA--AGTTCCTTTCCATTGAAGAAGTCCTGCAGCAGCTGCTGAACTTTGGGGATCC 1713679 Query 281871 GAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT-TTATCCAGTTTTGAATCC 281929 || || || ||||| | |||| ||||| || ||| | ||||| | || | |||| Sbjct 1713680 TAGTCGAACCACCAACAAGGACAACATCATGGACA-GTGCTCTTATCTATCTTGGTATCC 1713738 Query 281930 AATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACAAAGTTCTTCG 281989 | || || || || || | | ||| || | ||| |||||| || Sbjct 1713739 CTCAGGCACTTCTCCACAGGCTCCATGCACTTTCTGAATAGGTCCATGTTAAGTTCCTCA 1713798 Query 281990 AATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGAATCAACTTCA 282049 || | ||||| || | ||| || ||||||| ||||| | | |||||||| |||| Sbjct 1713799 AACCTGGCTCTGGTGATGGTGGAATAGAAATCAATGCCTTCATAGAGAGAATCAATTTCA 1713858 Query 282050 ATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACATGCTGTCCTTAGT 282109 |||||||| || | | |||||| |||| | ||||| | ||||||| ||||| || Sbjct 1713859 ATCGTAGTCTGGGCTGTAGAAGAAAGTGTCCTCTTAGCCCTCTCACATGAAGTCCTAAGC 1713918 Query 282110 CTTCGTAAGGCTTTTGCTGATTG--ATTCAAATCTGTTTTATATTTTCTCTTGAAATCTT 282167 |||| || || | | | || | | | ||| | || | ||| | ||| || |||| Sbjct 1713919 CTTCTCAAAGCCCTGG--GGTTCCCAGTGATATCCTTCTTGTGTTTCCGCTTAAACTCTT 1713976 Query 282168 CAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTG 282227 ||| | | || | || || ||||| || || || || | | ||||| || | Sbjct 1713977 GGACAAAGTGGTTGACCAAGCGGTTGTCAAAGTCCTCCCCACCAAGGTGAGTATCACCAG 1714036 Query 282228 ACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAACATCATGGGTTC 282287 || || | || | || | || || |||| || | |||| |||||| ||| | Sbjct 1714037 CTGTGGCCTTCACCTCAAATATACCCTCCTCAATAGTAAGTAGAGAGACATCAAAGGTGC 1714096 Query 282288 CACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTC-----TTGGTTT-TTATCAA 282341 ||||||| || ||||| || |||||| | || | | | ||| || |||| Sbjct 1714097 CACCACCAGGGTCGAAAATGAGGACATTCTTCTCACCAACACTAGTAGCTTTCTTGTCAA 1714156 Query 282342 GACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAG 282401 ||||||| |||| |||||||||| ||||||||| || || | || ||||| ||||| | Sbjct 1714157 GACCATAGGCAATTGCAGCAGCAGCTGGTTCATTGATGATACGCATGACATTGAGACCGG 1714216 Query 282402 CAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAG 282461 |||| || ||||||||||| || || || || ||||| || || || |||||||||| Sbjct 1714217 CAATAACACCCGCATCTTTAGTTGCCTGCCTCTGGGAATCATTGAAGTAAGCAGGAACAG 1714276 Query 282462 TAATAACGGCAT 282473 | | || |||| Sbjct 1714277 TGACCACAGCAT 1714288 Score = 100 bits (110), Expect = 2e-15 Identities = 99/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 ||||| | | ||||||||| ||||||||||| || || ||| ||||| ||| |||||| Sbjct 12449503 CCATAAGACAGAGCAGCAGCTGTTGGTTCATTGATGATCCTCTCAACATCAAGGCCAGCA 12449444 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 || | || ||||| || ||||| || | || | ||| || ||||| |||||||||||| Sbjct 12449443 ATGCGGCCAGCATCCTTTGTGGCCTGACGCTGAGCATCATTGAAATAAGCAGGAACAGTA 12449384 Query 282464 ATAACGGC 282471 || || || Sbjct 12449383 ATCACTGC 12449376 >seq3 Length=64463019 Score = 111 bits (122), Expect = 1e-18 Identities = 147/203 (72%), Gaps = 6/203 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCT-TGGT- 282332 |||||| || |||||||| | ||||| || || |||||| | || | |||| Sbjct 60411654 ACATCAAAAGTACCACCACCAAGGTCAAAGATGAGGACATTCTTCTCACCAACACTGGTA 60411595 Query 282333 ----TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAA 282388 | |||||||||||||| |||| ||| |||||||| || ||||| || || | || Sbjct 60411594 GCCTTCTTATCAAGACCATAGGCAATAGCGGCAGCAGTCGGCTCATTGATGATACGCAGC 60411535 Query 282389 ACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAA 282448 ||||| || |||||||| || ||||| || ||||| || || ||||| ||||| || Sbjct 60411534 ACATTGAGGCCAGCAATCACCCCAGCATCCTTGGTGGCCTGCCTCTGTGAGTCGTTGAAG 60411475 Query 282449 TATGCAGGAACAGTAATAACGGC 282471 || |||||||| || | ||| || Sbjct 60411474 TAGGCAGGAACTGTGACAACAGC 60411452 Score = 87.8 bits (96), Expect = 1e-11 Identities = 133/188 (71%), Gaps = 6/188 (3%) Strand=Plus/Minus Query 282275 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 282334 |||||| ||| ||||| |||| ||||| | || | | |||| || | || | Sbjct 4437626 ACATCAAAGGTACCACCTCCCAAGTCAAACACTAGAA---TTGTTTCATTATTTT---TC 4437573 Query 282335 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 282394 || || | |||||| || || | ||||||||||||||||| ||||| | | ||| | Sbjct 4437572 TTCTCGAAACCATAGGCCAATGATGCAGCAGTTGGTTCATTTATAATACGAAGAACTTCC 4437513 Query 282395 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 282454 || || ||||| | || |||||||| || ||| ||||||||||| || || ||||| Sbjct 4437512 AGCCCTGCAATACGGCCAGCATCTTTTGTTGCTGTCCTTTGTGAATCATTGAAGTATGCT 4437453 Query 282455 GGAACAGT 282462 || || || Sbjct 4437452 GGGACTGT 4437445 >seq8 Length=47074253 Score = 91.5 bits (100), Expect = 1e-12 Identities = 198/292 (68%), Gaps = 7/292 (2%) Strand=Plus/Minus Query 282188 CGATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAA 282247 || || |||||||| |||||||| | | ||||| || | || || | || | || Sbjct 45149338 CGGTTGTCAAAATCCTCACCTCCAAGATGAGTATCACCAGCTGTGGCAATGACCTCAAAG 45149279 Query 282248 AGTCCATCTTCAAGAGAC--AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAA 282305 | ||||| ||||| | | ||||| || ||| ||| ||||| || | || || | Sbjct 45149278 ATACCATC--CAAGATGCTGAGAAGAGAGACGTCAAAGGTACCACCTCCAAGGTCGAAGA 45149221 Query 282306 TAAGTACAT--TCATTTCTTTGTCTTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAG 282362 ||| |||| ||||| ||| | || || ||||||||||| || | ||||||| Sbjct 45149220 CAAGAACATAGTCATTATCAAATCTAGCCTTCTTGTCAAGACCATAAGCCATTGCAGCAG 45149161 Query 282363 CAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAG 282422 |||| || ||| | ||| | | |||||| ||||||||||| ||| ||||| | | Sbjct 45149160 CAGTCGGCTCAGAGACAATACGGATAACATTGAGACCAGCAATCACTCCAGCATCCCTGG 45149101 Query 282423 TGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATC 282474 || | || || || || ||| | | | ||||||||||| | || ||||| Sbjct 45149100 TGCCCTGCCTCTGCGAGTCGGTGGAGCAGGCAGGAACAGTGACGACAGCATC 45149049 >seq6 Length=48101398 Score = 87.8 bits (96), Expect = 1e-11 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 432291 AAAGAAGGTCGTATTAGAGGAAATTTGATGGGAAAGCGTGTCGATATGTCTGCACGTACA 432350 |||||||| || |||||||||||||||||||| |||||||| ||| | || || ||||| Sbjct 3522284 AAAGAAGGCCGGATTAGAGGAAATTTGATGGGCAAGCGTGTTGATTTCTCGGCCCGTACT 3522225 Query 432351 GTTATTACTTCTGATCCTAATAT 432373 ||||| || | ||||| ||||| Sbjct 3522224 GTTATCACACCAGATCCAAATAT 3522202 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740228403802488