Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_023681.1 Length=152710 Score E Sequences producing significant alignments: (Bits) Value seq4 89.7 5e-13 seq5 86.0 6e-12 >seq4 Length=49548238 Score = 89.7 bits (98), Expect = 5e-13 Identities = 79/99 (80%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 151105 ATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAtttttttGC 151164 ||| ||||||||||||| |||||||| || || | || |||||||| ||| | ||||| Sbjct 46294145 ATCCGCCAAACCTTGAACACCTATGCCAATTGGCCTGTGCCGCATATTTGATCTCTTTGC 46294204 Query 151165 AGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 || |||| ||| ||| ||||| |||||||||||| || Sbjct 46294205 GGTCTCAACAGGATAGTAATTGATATCAATAATTTTGTT 46294243 Score = 82.4 bits (90), Expect = 7e-11 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Plus Query 137203 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 137261 || ||||||| ||| || || || || ||||||||||| ||| | ||| ||| ||||| Sbjct 4633285 ACCAAATGAAGTGTTGACTCCTTCTGAATGTTGTAATCAGCT-AATGTTCTCCCATCTTC 4633343 Query 137262 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTC 137318 | ||| ||||||||| | ||||| | |||||| || || || ||||| || ||||| Sbjct 4633344 CAATTGCTTACCAGCAAAAATCAGCCTTTGCTGGTCTGGGGGAATGCCCTCCTTGTC 4633400 >seq5 Length=59822759 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 151097 ACAAATGCATCGGCCAAACCTTGAATGCCTATGCCGATGGGACGATGGCGCATATTAGAt 151156 || || | ||| ||||| ||||||| |||||||| || || | || |||||||| ||| Sbjct 16577857 ACGAAAGTATCTGCCAAGCCTTGAACACCTATGCCAATTGGCCTGTGACGCATATTTGAT 16577798 Query 151157 ttttttGCAGTTTCAATAGGGTAGAAATTGCGATCAATAATTTTATT 151203 |||||||||| |||| ||| || |||| |||||||||||| || Sbjct 16577797 CTTTTTGCAGTCTCAACAGGATAATAATTAATATCAATAATTTTGTT 16577751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 488493997521600