Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq1 102 5e-17 seq4 100 2e-16 seq4347 95.1 8e-15 >seq1 Length=61571842 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| ||| | ||||| ||| ||||||||||| || || |||||||| |||| Sbjct 3009423 CCACCCCTCAGACGAAGCACCAGATGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 3009482 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| |||| || || || || || || | | |||||| || | || Sbjct 3009483 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCAGCGAAGATGAGCCTCTGCTGGTCCGGGGGG 3009542 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| || ||||| Sbjct 3009543 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCAC 3009601 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 3009602 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 3009649 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || ||||||||||| || || |||||||| || | Sbjct 3014506 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGCA 3014565 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || ||||| || || || ||||| |||| ||||||||| || | || Sbjct 3014566 AGGGTGCGCCCATCCTCCAACTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGG 3014625 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| || ||||| Sbjct 3014626 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCAC 3014684 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || ||||| | || || || || |||||||| Sbjct 3014685 CTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAAATCTGCAT 3014732 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || || | ||| | ||||| || ||||||||||| || || ||||||||||| | Sbjct 2756150 CCTCCCCTAAGACGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAATCAGCA 2756091 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || |||||||| || | |||||||| || | || Sbjct 2756090 AGCGTGCGCCCATCCTCGAGCTGCTTGCCGGCAAAGATGAGCCGCTGCTGGTCCGGGGGA 2756031 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | |||||| || ||||| Sbjct 2756030 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCAATGGTGTCAGAAGACTCCAC 2755972 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 2755971 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 2755924 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || ||||||||||| || || |||||||| || | Sbjct 3009879 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCTGCA 3009938 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 3009939 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 3009998 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| || ||||| Sbjct 3009999 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCAC 3010057 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3010058 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 3010105 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || || |||||||| || || |||||||| |||| Sbjct 3010107 CCACCCCTCAGGCGGAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCGGCA 3010166 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || |||||||| || | | |||||| || | || Sbjct 3010167 AGGGTGCGGCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 3010226 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | |||| |||||| || ||||| Sbjct 3010227 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCAGAAGACTCCAC 3010285 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 |||| ||||| || || || || | || || |||||||||||||| Sbjct 3010286 CTCAAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 3010333 Score = 86.0 bits (94), Expect = 4e-12 Identities = 165/240 (69%), Gaps = 4/240 (2%) Strand=Plus/Plus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| || | ||||| || ||||||||||| || || ||| Sbjct 3014722 AAAATCTGCATCCCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATG 3014781 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | || ||||| | || |||| || || ||||| || || | | |||| Sbjct 3014782 TTGTAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGC 3014841 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || || ||||| || || | | || | ||| | |||||| Sbjct 3014842 TGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTC 3014900 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| || | ||||| || || || || | || || |||||||||||||| Sbjct 3014901 GGAGGACTCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 3014960 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 || || |||| ||| | ||||| || || |||||||| ||||| |||||||| || | Sbjct 2550122 CCTCCCCTCAGACGGAGCACCAGGTGAAGGGTGCTCTCCTTTTGGATGTTGTAGTCAGCA 2550181 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | || || ||||| || || | |||||||| || | || Sbjct 2550182 AGCGTGCGCCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGCCGCTGCTGGTCAGGAGGG 2550241 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | |||| ||||||| || ||||| Sbjct 2550242 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCAATGGTGTCGGAAGACTCCAC 2550300 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || || ||||||||||| Sbjct 2550301 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 2550348 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || ||||||||||| || || |||||||| || | Sbjct 2756834 CCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCA 2756775 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || || | || || || ||||| |||| |||||||| || | || Sbjct 2756774 AGGGTGCGGCCATCCTCGAGCTGCTTGCCAGCAAAGATCAGGCGCTGCTGGTCCGGGGGG 2756715 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || ||| |||| ||| | ||||||| || || Sbjct 2756714 ATGCCCTCCTTGTCCTGGATCTTGGCCTTC-ACATTGTCGATGGTGTCGGAGCTCTCAAC 2756656 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || || ||||||||||| Sbjct 2756655 CTCCAAGGTGATGGTCTTGCCAGTCAAGGTCTTCACGAAGATCTGCAT 2756608 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| |||| || | ||||| || || |||||||| || || |||||||| || | Sbjct 3009651 CCACCCCTCAGGCGAAGCACCAGGTGGAGGGTGCTCTCCTTCTGGATGTTGTAGTCAGCA 3009710 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || |||||| |||| || | || || |||||||| || | | |||||| || | || Sbjct 3009711 AGGGTGCGTCCGTCCTCAAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGG 3009770 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | |||||| || ||||| Sbjct 3009771 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCAGAGGACTCCAC 3009829 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 3009830 CTCGAGGGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCAT 3009877 >seq4 Length=49548238 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 33540 CACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTC 33599 ||||| || |||||| ||| || || |||||||| || | || ||||| | || || Sbjct 2205533 CACCAGGTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCTGCCAGGGTGCGGCCATCCTC 2205474 Query 33600 CAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGC 33659 || || || || ||||| |||| ||||||||| ||| |||| | || || ||||| Sbjct 2205473 CAGCTGCTTGCCAGCAAAGATCAGACGCTGCTGGTCTGGCGGGATGCCCTCCTTGTCCTG 2205414 Query 33660 AATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCACGTCAACCGTGATCGTTT 33718 || ||| |||| ||| |||| |||||| || ||||| || | ||||| || | Sbjct 2205413 GATCTTCGCCTTCA-CATTGTCAATGGTGTCAGAGGACTCCACCTCCAGGGTGATGGTCT 2205355 Query 33719 TACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | || || | || || ||||||||||||||| Sbjct 2205354 TGCCGGTGAGGGTCTTGACAAAGATCTGCATA 2205323 Score = 87.8 bits (96), Expect = 1e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || || | ||||| || || ||| ||| || || |||||||| || | Sbjct 2205323 ACCACCACGCAGGCGGAGCACCAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2205264 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || || ||| | || || | || || || ||||| || | ||||||||| || | || Sbjct 2205263 AAGGGTACGTCCATCCTCAAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCCGGGGG 2205204 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTCAC-GGTGTCGCTTGATTCCA 33700 | ||||| ||||| || ||| |||| ||| |||| |||||| || || | Sbjct 2205203 GATGCCTTCCTTGTCCTGGATCTTCGCCTTCA-CATTGTCAATGGTGTCTGAGGACTCAA 2205145 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATA 33750 | |||| ||||| || || || || | || || ||||||||||||||| Sbjct 2205144 CCTCAAGGGTGATGGTCTTGCCAGTGAGAGTCTTGACAAAGATCTGCATA 2205095 >seq4347 Length=1781 Score = 95.1 bits (104), Expect = 8e-15 Identities = 167/240 (70%), Gaps = 4/240 (2%) Strand=Plus/Minus Query 33513 AAAATCGTCA--CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATG 33570 |||||| || ||||| |||| || | ||||| || ||||||||||| || || ||| Sbjct 794 AAAATCTGCATCCCACCCCTCAGGCGGAGCACCAGGTGGAGAGTGCTCTCCTTCTGGATG 735 Query 33571 TTGTAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGC 33630 ||||| || | || ||||| | || |||| || || |||||||| || | | |||| Sbjct 734 TTGTAGTCCGCAAGGGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGC 675 Query 33631 TGATCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTC 33689 || || | || | || || ||||| || || | | || | ||| | |||||| Sbjct 674 TGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTC 616 Query 33690 GCTTGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || ||||| |||| ||||| || || ||||| | || || || ||||||||||| Sbjct 615 GGAAGACTCCACCTCAAGGGTGATGGTCTTGCCTGTGAGGGTCTTAACGAAGATCTGCAT 556 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| ||||| || | ||||| || ||||||||||| || || |||||||| || | Sbjct 554 CCACCCCTCAAGCGGAGCACCAGGTGAAGAGTGCTCTCCTTCTGGATGTTGTAGTCCGCA 495 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || |||||||| || | | |||||| || | || Sbjct 494 AGAGTGCGGCCATCCTCCAGCTGCTTGCCGGCAAAGATGAGCCTCTGCTGGTCCGGGGGA 435 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || | | || | ||| | ||||||| || ||||| Sbjct 434 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTGTCGATGGTGTCGGAGGACTCCAC 376 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || | || || |||||||||||||| Sbjct 375 CTCGAGGGTGATGGTCTTGCCAGTGAGGGTCTTAACAAAGATCTGCAT 328 Score = 84.2 bits (92), Expect = 1e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || || | ||||| || || ||| ||| || || |||||||| || | Sbjct 1238 CCACCACGCAGGCGGAGCACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCCGCC 1179 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || || || ||||| |||| ||||||||| || | || Sbjct 1178 AGGGTGCGGCCATCCTCCAGCTGCTTGCCTGCAAAGATCAGACGCTGCTGGTCCGGGGGG 1119 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | || || ||||| || || || | | | ||| | ||||||| || ||||| Sbjct 1118 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTGTCGATGGTGTCGGAGGACTCCAC 1060 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||| || || || || || || || |||||||||||||| Sbjct 1059 CTCGAGGGTGATGGTCTTGCCAGTCAAGGTCTTCACAAAGATCTGCAT 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328671198216960