Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_025456.1 Length=46547 Score E Sequences producing significant alignments: (Bits) Value seq2 188 2e-43 seq4 159 1e-34 >seq2 Length=61504503 Score = 188 bits (208), Expect = 2e-43 Identities = 332/477 (70%), Gaps = 14/477 (3%) Strand=Plus/Minus Query 19511 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 19570 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 2078337 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 2078278 Query 19571 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCTCCACCAGT 19629 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 2078277 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 2078219 Query 19630 TGACATTGATGGCATCCGCGAACCCGTATCCGGTAGCCTTCTTTATGGAAACAACATCAT 19689 || |||||||| || || || || || || ||| | |||||||||||||| || || Sbjct 2078218 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 2078159 Query 19690 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 19747 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 2078158 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 2078101 Query 19748 GAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19807 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 2078100 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 2078041 Query 19808 CACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTA 19867 |||||| | |||| | | ||| ||||| || |||||||||||||| | || || Sbjct 2078040 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2077981 Query 19868 GGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGGTTGCAGCCGCCTCTGCGGTC 19927 || ||| | ||||||||| |||||| || || ||||| |||||||| || |||| || Sbjct 2077980 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGT- 2077922 Query 19928 TTTCTCG------TCTACCCGTTTGGTCAGGGTAGCTTCTCCGATGCTA-TGCCTTT 19977 ||||| | ||| | ||||||| || || || || ||||||| |||||| Sbjct 2077921 TTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTACAGCCTTT 2077865 >seq4 Length=49548238 Score = 159 bits (176), Expect = 1e-34 Identities = 226/312 (72%), Gaps = 7/312 (2%) Strand=Plus/Plus Query 19670 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 19727 |||||||||||||| || || || || ||| | |||| | | ||| || |||||| Sbjct 24272534 CTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA--GCGATCGGAT 24272591 Query 19728 TACACTTCTACCCAATTTGGGAAGCTAGTTCACTTGATGAATGGCTCTACAACGGGGGAC 19787 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 24272592 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCC 24272651 Query 19788 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCATCTATGCTTACATGGGACGAGAGT 19847 | | | || | || | |||||| | |||| | | ||| ||||| | |||| Sbjct 24272652 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGT 24272711 Query 19848 GGGAACTTAGCTATCGACTAGGAATGAGGCCTTGGATTTGTGTTGCCTACTCTGCTCCGG 19907 |||||||||| | || || || ||| | ||||||||| |||||| || || ||||| | Sbjct 24272712 GGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 24272771 Query 19908 TTGCAGCCGCCTCTGCGGTCTTTCTCG-TCTACCCGTTTGGTCAGGGTAGCTTCTCCGAT 19966 ||||||| || |||| || ||||| | | |||| ||||||| || || || || ||| Sbjct 24272772 TTGCAGCTGCTACTGCTGT-TTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGAT 24272830 Query 19967 GCTAT-GCCTTT 19977 ||||| |||||| Sbjct 24272831 GCTATAGCCTTT 24272842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148814329003704