Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_025461.1 Length=45871 Score E Sequences producing significant alignments: (Bits) Value seq2 183 9e-42 seq4 138 3e-28 seq6 80.6 8e-11 >seq2 Length=61504503 Score = 183 bits (202), Expect = 9e-42 Identities = 315/451 (70%), Gaps = 11/451 (2%) Strand=Plus/Minus Query 28639 AACTGGGTCACTTCGACCAACAACCGTCTTTATGTTGGGTGGTTTGGAACACTGATGATT 28698 |||||| | ||| ||| | ||||||||||| | || ||||| || ||||||| Sbjct 2078337 AACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATC 2078278 Query 28699 CCGTGTCTCCTTGCAGCCACCATCTGC-TTCATTATTGCATTCATTGCGGCACCACCAGT 28757 || | || ||| || | |||| || ||||| || ||||| || || || ||||| Sbjct 2078277 CC-TACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 2078219 Query 28758 TGACATTGATGGCATCCGCGAACCTGTCGCTGGAAGTCTTCTCTATGGAAACAACATCAT 28817 || |||||||| || || || ||||| |||| | | || ||||||||||| || || Sbjct 2078218 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 2078159 Query 28818 ATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 28875 || || ||| | | || | | || || |||||| | ||||| |||||||||||| Sbjct 2078158 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 2078101 Query 28876 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 28935 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 2078100 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 2078041 Query 28936 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 28995 |||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 2078040 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2077981 Query 28996 GGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCGTCGCAGCGGCATCTGCGGTT 29055 || ||| | || |||||| ||| ||||| |||||||| || ||||| || |||| ||| Sbjct 2077980 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2077921 Query 29056 TTCCTCGTCTACCC-ATTC----GGTCAAGG 29081 ||| | | |||| |||| |||||||| Sbjct 2077920 TTCTTGATTGACCCTATTCTATTGGTCAAGG 2077890 >seq4 Length=49548238 Score = 138 bits (152), Expect = 3e-28 Identities = 219/311 (70%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 28798 CTCTATGGAAACAACATCATATCGGGAGCCGTCGTACCGAG--CAGCAATGCCATCGGAC 28855 || ||||||||||| || || || || ||| | | || | | ||| || |||||| Sbjct 24272534 CTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA--GCGATCGGAT 24272591 Query 28856 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 28915 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 24272592 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCC 24272651 Query 28916 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 28975 | | | || | || | |||||| | |||| || | ||| ||||| | |||| Sbjct 24272652 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGT 24272711 Query 28976 GGGAACTTAGCTATCGACTAGGAATGAGGCCGTGGATTTGTGTCGCATACTCAGCTCCCG 29035 |||||||||| | || || || ||| | || |||||| ||| ||||| |||||||| | Sbjct 24272712 GGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 24272771 Query 29036 TCGCAGCGGCATCTGCGGTTTTCCTCGTCTACCCATTCGGTCAAGGTTCTTTTAGCGACG 29095 | ||||| || |||| |||||| | | |||| | |||||||| |||| || | Sbjct 24272772 TTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATG 24272831 Query 29096 CGAT-GCCTTT 29105 | || |||||| Sbjct 24272832 CTATAGCCTTT 24272842 >seq6 Length=48101398 Score = 80.6 bits (88), Expect = 8e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 29313 AGAGACTTATAACATCGTAGCCGCTCACGGTTACTTTGGACGTTTGATCTTCCAATATGC 29372 || |||||||||||| || || ||||||||||| ||||| || || |||||||||||||| Sbjct 8140971 AGGGACTTATAACATTGTGGCTGCTCACGGTTATTTTGGTCGATTAATCTTCCAATATGC 8141030 Query 29373 TTCTTTCAATAA 29384 | |||||| || Sbjct 8141031 TAGTTTCAACAA 8141042 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146651339337048