Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_025464.1 Length=44147 Score E Sequences producing significant alignments: (Bits) Value seq2 235 2e-57 seq4 156 1e-33 seq8 102 2e-17 >seq2 Length=61504503 Score = 235 bits (260), Expect = 2e-57 Identities = 328/451 (73%), Gaps = 13/451 (3%) Strand=Plus/Minus Query 18731 ACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTGATGATTC 18790 ||||| |||| || || || ||||||||||| ||||| ||||| || ||||||| | Sbjct 2078336 ACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCC 2078277 Query 18791 CGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCACCTCCTGT 18848 | | || ||| | || ||| | ||| || ||||| || ||||| ||||| ||||| || Sbjct 2078276 C-TACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGT 2078219 Query 18849 AGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACAACATCAT 18908 ||| |||||||| || || ||||||||| | || | | |||||||||||||| || || Sbjct 2078218 AGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTAT 2078159 Query 18909 ATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGACTACACTTCTACCCAATTTGG 18966 || || ||| | |||| | | || || |||||| | ||||| |||||||||||| Sbjct 2078158 CTCTGGTGCCATTATTCCTACTTCTGCG--GCGATCGGATTGCACTTTTACCCAATTTGG 2078101 Query 18967 GAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGACCGTTCCAACTTGTGGTCTTC 19026 |||||| || ||||||| ||| | ||||| || || || | | || | || | Sbjct 2078100 GAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTA 2078041 Query 19027 CACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGTGGGAACTTAGCTATCGACTA 19086 |||||| | |||| || | ||| ||||| || |||||||||||||| | || || Sbjct 2078040 CACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTG 2077981 Query 19087 GGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTGTTGCCGCAGCCTCTGCGG-- 19144 || ||||| ||||||||| |||||| || |||||||||||||| || || |||| | Sbjct 2077980 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTT 2077921 Query 19145 -TCTTCCTTG--TCTATCCATTTGGTCAAGG 19172 |||| ||| |||| | |||||||||| Sbjct 2077920 TTCTTGATTGACCCTATTCTATTGGTCAAGG 2077890 >seq4 Length=49548238 Score = 156 bits (172), Expect = 1e-33 Identities = 223/311 (72%), Gaps = 5/311 (2%) Strand=Plus/Plus Query 18889 CTTTATGGAAACAACATCATATCGGGAGCCGTCGTTCCGAG--CAGCAATGCCATCGGAC 18946 |||||||||||||| || || || || ||| | |||| | | ||| || |||||| Sbjct 24272534 CTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCA--GCGATCGGAT 24272591 Query 18947 TACACTTCTACCCAATTTGGGAAGCTAATTCACTTGATGAATGGCTCTACAACGGGGGAC 19006 | ||||| |||||||||||||||||| || ||||||| ||| | ||||| || || | Sbjct 24272592 TGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCC 24272651 Query 19007 CGTTCCAACTTGTGGTCTTCCACTTCCTCATTGGCGTCTATGCTTACATGGGACGCGAGT 19066 | | | || | || | |||||| | |||| || | ||| ||||| | |||| Sbjct 24272652 CTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGT 24272711 Query 19067 GGGAACTTAGCTATCGACTAGGGATGCGCCCTTGGATTTGTGTTGCCTACTCAGCTCCTG 19126 |||||||||| | || || || ||||| ||||||||| |||||| || |||||||||| Sbjct 24272712 GGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTG 24272771 Query 19127 TTGCCGCAGCCTCTGCGGTCTTCCTTGTCTATCCATTTGGTCAAGGTTCCTTTAGCGACG 19186 |||| || || |||| || ||| | | | || |||||||||| ||| || | Sbjct 24272772 TTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATG 24272831 Query 19187 CTAT-GCCTTT 19196 |||| |||||| Sbjct 24272832 CTATAGCCTTT 24272842 >seq8 Length=47074253 Score = 102 bits (112), Expect = 2e-17 Identities = 136/184 (74%), Gaps = 4/184 (2%) Strand=Plus/Minus Query 18724 TTTTGTGACTGGGTAACCAGTACAGATAACCGTCTTTATATCGGCTGGTTTGGAACACTG 18783 || ||| ||||| ||| || || || ||||||||||| ||||| ||||| || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 18784 ATGATTCCGTGTCTCCTTG-CAGCTACTATTTGT-TTCATTATTGCCTTCATTGCTGCAC 18841 ||||| || | || ||| | || ||| | || || ||||| |||||||| ||||| | Sbjct 5860655 ATGATCCC-TACCTTATTGACCGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTC 5860598 Query 18842 CTCCTGTAGACATTGATGGCATCCGCGAGCCTGTTGCAGGCAGTCTTCTTTATGGAAACA 18901 |||| ||||| |||||||| || || ||||||||| || | | ||||||||||| | Sbjct 5860597 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATA 5860538 Query 18902 ACAT 18905 | || Sbjct 5860537 ATAT 5860534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 141135075749304