Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_026923.1 Length=179110 Score E Sequences producing significant alignments: (Bits) Value seq2 237 2e-57 seq4 159 4e-34 >seq2 Length=61504503 Score = 237 bits (262), Expect = 2e-57 Identities = 338/473 (71%), Gaps = 7/473 (1%) Strand=Plus/Minus Query 157675 CTTCTGCGAGTGGGTAACCTCAACCAACAACCGTTTGTATGTTGGTTGGTTCGGTGTACT 157734 ||||||| | ||| |||| ||| | |||||| | || | || ||||||||||| | Sbjct 2078344 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 2078285 Query 157735 GATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTCGCCTTCGTCGCTGCTC 157793 |||||| ||||| || | | |||||| ||||| || || |||| ||| ||||||| | Sbjct 2078284 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 157794 CCCCTGTGGACATTGACGGCATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACA 157853 | || || || ||||| || || || || || ||| ||||||| | | ||||| |||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 157854 ACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACGCAATCGGTCTCCACTTCTACCCCA 157913 | || ||||||||||| || |||||| ||| || ||||| | ||||| ||||| | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 157914 TCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATAACGGTGGTCCTTTCCAACTTGTAG 157973 | |||||||| |||||| |||| |||||| | || || || || |||| | || | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 157974 TATTCCACTTCCTGATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTCTCTTACC 158033 | | |||||| | | || | | |||||||| |||||||||||||| || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 158034 GTTTAGGTATGCGCCCATGGATCTGTGTAGCATATTCTGCTCCAGTCGCTGCAGCGAGTG 158093 || | |||||||| || ||||| ||| |||||||| ||||| || || || || | || Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 158094 CAGTATTCCT-----AGTCTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158141 | || ||| | | |||| || | |||||||| ||| || ||||||| Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 159 bits (176), Expect = 4e-34 Identities = 227/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 157830 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACG 157889 ||||||| | | ||||| ||||| || ||||||||||| || |||||| ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 157890 CAATCGGTCTCCACTTCTACCCCATCTGGGAAGCAGCATCTCTTGACGAGTGGCTGTATA 157949 | ||||| | ||||| ||||| || |||||||| |||||| |||| |||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 157950 ACGGTGGTCCTTTCCAACTTGTAGTATTCCACTTCCTGATCGGCATCTATGCCTATATGG 158009 | || || |||| | || | || | |||||| | | || | | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 158010 GACGTGAGTGGGAACTCTCTTACCGTTTAGGTATGCGCCCATGGATCTGTGTAGCATATT 158069 | | |||||||||||| || |||| | |||||||| || ||||| ||| ||||||| Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 158070 CTGCTCCAGTCGCTGCAGCGAGTGCAGTATTCCTAGTCTATCCTTTCGGTCAAGGTTCTT 158129 | ||||| || || || || | ||| || ||| | | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 158130 TCTCCGATGCTAT-GCCT 158146 | || |||||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 572965350993600