Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_026927.1 Length=228143 Score E Sequences producing significant alignments: (Bits) Value seq2 244 2e-59 seq4 149 9e-31 >seq2 Length=61504503 Score = 244 bits (270), Expect = 2e-59 Identities = 316/434 (73%), Gaps = 7/434 (2%) Strand=Plus/Minus Query 174489 ACCAACAATCGTCTTTACGTCGGTTGGTTCGGTGTTCTAATGATTCCTACATTGTTAGCC 174548 ||| | || ||||||||| |||| |||||||||||| | ||||| ||||| || || || Sbjct 2078322 ACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTGATGATCCCTACCTTATTGACC 2078263 Query 174549 GCAACTGTATGT-TTCATTATCGCTTTCGTGGGTGCTCCCCCAGTGGACATCGACGGAAT 174607 |||||| | ||| || |||||||||||| | | ||| || ||||| || || || || || Sbjct 2078262 GCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTAT 2078204 Query 174608 CCGTGAACCAGTAGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGT 174667 ||||| || || ||||||| | | ||||||||||| || ||||||||||| || | Sbjct 2078203 TCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTAT 2078144 Query 174668 TCCTAGTTCAAACGCAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGA 174727 ||||| ||| || ||||| | ||||| |||||||| |||||||| || | | || Sbjct 2078143 TCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGA 2078084 Query 174728 CGAATGGCTCTACAACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTAT 174787 || ||| | ||||| || || |||| | ||| |||| | |||||| | ||||| | Sbjct 2078083 TGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGT 2078024 Query 174788 CTACGCCTATATGGGACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGAT 174847 |||||||| |||||||||||||| || ||| | |||||| | |||||||| Sbjct 2078023 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 2077964 Query 174848 CTGTGTAGCATACTCTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCT-----AGTCTAT 174902 ||| ||||| || || || |||||||| ||| | || || ||| | | |||| Sbjct 2077963 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTAT 2077904 Query 174903 CCTTTCGGTCAAGG 174916 || | |||||||| Sbjct 2077903 TCTATTGGTCAAGG 2077890 >seq4 Length=49548238 Score = 149 bits (164), Expect = 9e-31 Identities = 210/295 (71%), Gaps = 0/295 (0%) Strand=Plus/Plus Query 174622 CTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTAGTTCAAACG 174681 ||||||| | | ||||||||||| || ||||||||||| || |||||| ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 174682 CAATCGGTCTACACTTCTACCCAATCTGGGAAGCAGCCACACTCGACGAATGGCTCTACA 174741 | ||||| | ||||| |||||||| |||||||| || | | || || ||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 174742 ACGGTGGTCCTTTCCAACTAGTTGTCTTCCACTTCCTTATTGGTATCTACGCCTATATGG 174801 | || || |||| | ||| |||| | |||||| | ||||| | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 174802 GACGTGAGTGGGAACTCTCTTATCGTTTAGGTATGAGACCTTGGATCTGTGTAGCATACT 174861 | | |||||||||||| || ||| | |||||| | |||||||| ||| ||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 174862 CTGCACCAGTTGCAGCAGCTTCAGCAGTATTCCTAGTCTATCCTTTCGGTCAAGG 174916 | || || |||||||| ||| | || || ||| | | | ||| | |||||||| Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGG 24272817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 729854891705440