Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_027130.1 Length=172688 Score E Sequences producing significant alignments: (Bits) Value seq2 205 1e-47 seq4 132 5e-26 >seq2 Length=61504503 Score = 205 bits (226), Expect = 1e-47 Identities = 330/472 (70%), Gaps = 7/472 (1%) Strand=Plus/Minus Query 158379 TTCTGCGAGTGGGTAACTTCTACCAATAACCGCCTCTATGTCGGTTGGTTCGGCGTACTG 158438 |||||| | ||| ||||| ||| | ||||| || || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 158439 ATGATTCCAACTCTGTTGGCAGCAACCATCTGT-TTCATCGTCGCCTTCGTCGCTGCTCC 158497 ||||| || || | ||| | ||||| ||||| || || |||| ||| ||||||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 158498 CCCTGTGGACATCGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGTAACAA 158557 || || || || || || || ||||| || || ||||||| | | ||||| ||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 158558 CATCATCTCTGGTGCAGTTGTACCATCTTCCAACGCAATTGGTCTTCACTTCTATCCCAT 158617 || ||||||||||| || | || |||| || || || | ||||| || || || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 158618 CTGGGAAGCCGCATCACTTGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTCGTAGT 158677 |||||||| ||||| ||||||||||| | || || || || |||| | || | || Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 158678 CTTTCACTTCCTTATCGGCATCTATGCATATATGGGACGTGAATGGGAACTTTCATACCG 158737 | |||||| | | || | | |||||||| ||||| ||||||||| | ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 158738 CTTAGGTATGCGCCCCTGGATCTGTGTAGCATATTCTGCACCAGTCGCTGCAGCATCTGC 158797 | |||||||| || ||||| ||| |||||||| || || || || || || |||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 158798 TGTATTCCTCGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCCGATGCTA 158844 ||| ||| | | |||| || | |||||||| ||| || ||||||| Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 Score = 105 bits (116), Expect = 7e-18 Identities = 122/163 (75%), Gaps = 1/163 (1%) Strand=Plus/Plus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | |||| |||||||||||| | || ||||| || Sbjct 2076789 TTTGATATTATGGACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGC 2076848 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGAACAACTTTC 160018 || | || |||| ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 2076849 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTT 2076908 Query 160019 GCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCT-ATCTT 160060 | ||| ||||||||||||||| | |||||||||| ||||| Sbjct 2076909 GTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 2076951 >seq4 Length=49548238 Score = 132 bits (146), Expect = 5e-26 Identities = 221/318 (69%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 158533 CTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTACCATCTTCCAACG 158592 ||||||| | | ||||| ||||| || ||||||||||| || | || |||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 158593 CAATTGGTCTTCACTTCTATCCCATCTGGGAAGCCGCATCACTTGATGAGTGGCTGTATA 158652 | || || | ||||| || || || |||||||| ||||| ||||||||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 158653 ACGGTGGTCCTTTCCAACTCGTAGTCTTTCACTTCCTTATCGGCATCTATGCATATATGG 158712 | || || |||| | || | || | |||||| | | || | | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 158713 GACGTGAATGGGAACTTTCATACCGCTTAGGTATGCGCCCCTGGATCTGTGTAGCATATT 158772 | | ||| ||||||||| | ||| | |||||||| || ||||| ||| ||||||| Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 158773 CTGCACCAGTCGCTGCAGCATCTGCTGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTT 158832 | || || || || || || ||||||| ||| | | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 158833 TCTCCGATGCTAT-GCCT 158849 | || |||||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/164 (74%), Gaps = 2/164 (1%) Strand=Plus/Minus Query 159899 TTTGACATACTCGACGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGCTGGTCTGGA 159958 ||||| || | ||||||||| | | |||| | |||||||||| | || ||||| || Sbjct 21863120 TTTGATATTATGGACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGC 21863061 Query 159959 CTTCTTCTTCTTCCCACTGCTTATCTTGCTATT-GGCGGTTGGCTTACTGGAACAACTTT 160017 || | || |||| ||||||| | ||| | || |||||| |||| || || ||||| Sbjct 21863060 CTATTGCTCTTTCCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTT 21863001 Query 160018 CGCAACGAGCTGGTATACCCATGGACTCGCTAGTTCCT-ATCTT 160060 | ||| ||||||||||||||| | |||||||||| ||||| Sbjct 21863000 TGTAACTTCTTGGTATACCCATGGATTGGCTAGTTCCTAATCTT 21862957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552417054327040