Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_027132.1 Length=190768 Score E Sequences producing significant alignments: (Bits) Value seq2 241 2e-58 seq4 165 1e-35 seq8 86.0 8e-12 >seq2 Length=61504503 Score = 241 bits (266), Expect = 2e-58 Identities = 338/472 (72%), Gaps = 7/472 (1%) Strand=Plus/Minus Query 178861 TTCTGCGAGTGGGTAACGTCCACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTG 178920 |||||| | ||| |||| |||| | || ||| | || | || ||||||||||| || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 178921 ATGATTCCTACGTTGCTTGCTGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACC 178979 ||||| ||||| || | | |||||| ||||| || || | |||||| | || || || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCCC 2078225 Query 178980 TCCCGTCGATATTGACGGCATCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAA 179039 ||| || |||||||| || || ||||| || || ||||||| | | ||||||||||| Sbjct 2078224 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAA 2078165 Query 179040 CATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACGCAATTGGTCTACACTTCTACCCCAT 179099 || ||||||||||| || | || | ||| || || || | ||||| ||||| || Sbjct 2078164 TATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAAT 2078105 Query 179100 CTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTTCCAACTGGTAGT 179159 |||||||| ||||| | ||||||||| | || || || || |||| | || | || Sbjct 2078104 TTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGT 2078045 Query 179160 CTTCCACTTCCTTATCGGCATCTATGCCTATATGGGACGTGAGTGGGAACTTTCTTACCG 179219 | |||||| | | || | | |||||||| ||||||||||||||| || ||| Sbjct 2078044 TCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCG 2077985 Query 179220 TCTAGGTATGCGTCCATGGATCTGTGTTGCATACTCTGCACCAGTCGCTGCTGCGAGTGC 179279 ||| ||||||||||| ||||| ||||||||| || || || || || ||||| | ||| Sbjct 2077984 TCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGC 2077925 Query 179280 AGTATTCCTCGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCTA 179326 || ||| | | |||| || | |||||||| ||| |||||||||| Sbjct 2077924 TGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 165 bits (182), Expect = 1e-35 Identities = 228/318 (72%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 179015 CTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCAAGTTCAAACG 179074 ||||||| | | ||||||||||| || ||||||||||| || | || | ||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 179075 CAATTGGTCTACACTTCTACCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATA 179134 | || || | ||||| ||||| || |||||||| ||||| | ||||||||| | || | Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 179135 ACGGTGGTCCTTTCCAACTGGTAGTCTTCCACTTCCTTATCGGCATCTATGCCTATATGG 179194 | || || |||| | || | || | |||||| | | || | | ||||||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 179195 GACGTGAGTGGGAACTTTCTTACCGTCTAGGTATGCGTCCATGGATCTGTGTTGCATACT 179254 | | ||||||||||||| || |||||| ||||||||||| ||||| ||||||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 179255 CTGCACCAGTCGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTT 179314 | || || || || ||||| | ||| || ||| | | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 179315 TCTCTGATGCTAT-GCCT 179331 | ||||||||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 >seq8 Length=47074253 Score = 86.0 bits (94), Expect = 8e-12 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 178881 CACCAACAATCGTTTGTATGTTGGTTGGTTCGGTGTGCTGATGATTCCTACGTTGCTTGC 178940 |||| | || ||| | || | || ||||| ||||| ||||||| ||||| || | | Sbjct 5860695 CACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTGATGATCCCTACCTTATTGAC 5860636 Query 178941 TGCAACTATCTGT-TTCATCGTTGCTTTCGTAGCAGCACCTCCCGTCGATATTGACGGCA 178999 |||||| || || || || | || ||| | || || ||||| || |||||||| || | Sbjct 5860635 CGCAACT-TCCGTATTTATTATCGCCTTCATCGCTGCTCCTCCAGTAGATATTGATGGTA 5860577 Query 179000 TCCGTGAACCCGTCGCTGGTTCACTCATGTATGGAAACAACATCATCTCTGGTGCTGTT 179058 | ||||| || || |||||| | | |||||||| || || ||||||||||| || Sbjct 5860576 TTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAATATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610267132765440