Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq4 96.9 5e-15 seq5 93.3 6e-14 seq7 89.7 7e-13 seq1 89.7 7e-13 >seq4 Length=49548238 Score = 96.9 bits (106), Expect = 5e-15 Identities = 154/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 ||||| ||||| | || | ||||| | ||| |||| | | ||| |||| ||| ||| Sbjct 46295707 CCTCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCCA 46295766 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || || | ||||||||||| ||| ||||| || | || || ||||| || || Sbjct 46295767 TTGGACGTTCCATTTGTTCCCCGAATGTAACTCCCAGTAGCACGGATATTGTGAACTGAG 46295826 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 46295827 ACACCAATTCCTCCAGCTGATTTGCTTATCACAGCACATTCCTTCAGAGTATCATAAATT 46295886 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| ||||| | ||| |||||||| Sbjct 46295887 CCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 46295927 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 42842258 GCAGGCGAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 42842317 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 42842318 GCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 42842376 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 42842377 AGATGCCCTCAAC 42842389 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 69751 CCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACCA 69810 || || ||||| | || | || || | ||| |||| | | ||| |||| ||| ||| Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 69811 TTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGAT 69870 || ||| | ||||||||||| ||| ||||| || | || |||||||| ||| || Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 69871 AGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATA 69930 | ||| |||| ||| || |||| || | |||||| |||| || ||||| || Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 69931 CCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| ||||| |||||| |||| | || |||||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATACAGATGAGGAAACAGCT 16576067 Score = 84.2 bits (92), Expect = 3e-11 Identities = 104/138 (75%), Gaps = 6/138 (4%) Strand=Plus/Minus Query 69063 ATCGAATGGATAATGTAAAAGAATA--AATGCATCTGCCAATCCCTGAACCCCAATACCG 69120 ||||||||| ||| || |||| || | ||||||||| || ||||| || || || Sbjct 16577879 ATCGAATGGC--ATGCCAAGTAATACGAAAGTATCTGCCAAGCCTTGAACACCTATGCCA 16577822 Query 69121 ATAGGTCTATGTCTCTTATTTGAACTTTCAGCT-TCTGGAATAGGATAATAATTAATATC 69179 || || || || | | ||||||| |||| || ||| || |||||||||||||||||| Sbjct 16577821 ATTGGCCTGTGACGCATATTTGATCTTTTTGCAGTCTC-AACAGGATAATAATTAATATC 16577763 Query 69180 TATAATTTTATTAAGATT 69197 |||||||| || ||||| Sbjct 16577762 AATAATTTTGTTGAGATT 16577745 >seq7 Length=46770411 Score = 89.7 bits (98), Expect = 7e-13 Identities = 101/133 (76%), Gaps = 2/133 (2%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||||||||| || || |||||||| || | || | ||||| || || ||||| Sbjct 35944629 GCAGGCGAAGTCGCAGTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAG 35944688 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA-AAAGATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||| || ||||| ||| || || || || |||| Sbjct 35944689 ACCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGC-GCAGAAGGAGCCCGAGAAGA 35944747 Query 39735 AGATGCCTTCTAC 39747 ||||||| || || Sbjct 35944748 AGATGCCCTCGAC 35944760 >seq1 Length=61571842 Score = 89.7 bits (98), Expect = 7e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 69750 TCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCATCGGAATAATACC 69809 ||| || ||||| | || | ||||| | ||| | || | ||||| |||| ||| || Sbjct 60058552 TCCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCC 60058493 Query 69810 ATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAATAGA 69869 |||||| | ||||||||||| ||| ||||| || | || ||||| || ||| || Sbjct 60058492 ATTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATGTTGTGAATTGA 60058433 Query 69870 TAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATATAT 69929 || ||| |||||||| || ||| || |||||| | | || ||||| || Sbjct 60058432 TACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAAT 60058373 Query 69930 ACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCT 69971 ||||| || ||||||||| ||||| | ||| || ||||| Sbjct 60058372 TCCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 60058331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686838494884320