Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq7 118 1e-21 seq4 111 2e-19 >seq7 Length=46770411 Score = 118 bits (130), Expect = 1e-21 Identities = 115/148 (78%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 |||||| ||||| || ||||| || || || || |||||| ||||| |||||||| || Sbjct 35944644 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 35944703 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 35944704 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 35944763 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 35944764 GGCGAAGGCGACGAGGCGCTCGGCGAAG 35944791 >seq4 Length=49548238 Score = 111 bits (122), Expect = 2e-19 Identities = 193/281 (69%), Gaps = 0/281 (0%) Strand=Plus/Minus Query 11453 TCAAAACGACCCGGGCGAAGGAGGGCGTCATCAAGGATATCCACGCGATTAGTGGCCGCA 11512 ||||| || || || | ||| | ||| ||| | ||| || | || |||||||| ||| Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 11513 ATAACCACAATGCCAGTCTCATTGTCAAAGCCATCCATCTCGGTGAGTAATTGATTAATT 11572 ||||| | ||| ||||| | ||||| |||||||| || || | | ||| || | Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATTTCAGTCAACAGTTGGTTGAGA 3676793 Query 11573 GTTTGTTCTCTCTCATCATTTGCTGGCATACCACCAGCACTGCGTTGCTTGCCCACCGCA 11632 || || || || ||||||||| | | ||| | || | |||| | || || ||| Sbjct 3676792 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAGCA 3676733 Query 11633 TCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCG 11692 ||||| ||||||| || || || || || ||| || ||| | | || ||||| Sbjct 3676732 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAAAGATCA 3676673 Query 11693 CGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAA 11733 ||||| | ||||| ||||||||||||||||||||||| Sbjct 3676672 CGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAA 3676632 Score = 109 bits (120), Expect = 7e-19 Identities = 217/322 (67%), Gaps = 12/322 (4%) Strand=Plus/Minus Query 11538 CAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCTG 11597 |||||||||||||||| || | | || ||||| || || || ||||| || || | Sbjct 528441 CAAAGCCATCCATCTCCGTCAAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC-- 528384 Query 11598 GCATACCACCA------GCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGA 11651 ||||||| |||| || ||| | || || |||||||||||||| ||||||| Sbjct 528383 ----ACCACCAAGGCCGGCACCACGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGA 528328 Query 11652 CAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCA 11711 |||| || || || | ||| | || || || ||||| ||||| |||||| | Sbjct 528327 CAATGCAGGGCGCCTTGGCCTTGGCCTTCTCGAAAAGGTCGCGCACCCTGGAGGCACCGA 528268 Query 11712 CACCAACAAACATCTCCACAAAGTTTGCGGCAGAGCACTGGATGAATGGGACATTTGATT 11771 |||| || || | ||| || || | || || | ||| || ||| || || | | Sbjct 528267 CACCGACGAAGAGCTCGACGAACTCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCT 528208 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| |||| ||| || ||||| ||||| || || || || ||| || | || || Sbjct 528207 CACCAGCGACGGCACGCGCGAGCAGGGTTTTACCTGTCCCGGGCGGGCCGACCAGGAGAC 528148 Query 11832 CGCCTCGGGGGATCTTGGCACC 11853 || ||||||||||||||| Sbjct 528147 ATCCCTTGGGGATCTTGGCACC 528126 Score = 109 bits (120), Expect = 7e-19 Identities = 113/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 122670 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACC 122729 ||| || ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 42842273 GTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCATGAGGCC 42842332 Query 122730 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 122789 |||||||| | ||| | || |||||||| || || ||||||||||| ||||| || || Sbjct 42842333 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCAACGCA 42842392 Query 122790 CGCAAACGCAAAAAGGCGTTCGGCGAAG 122817 || || || | ||||| ||||||||| Sbjct 42842393 GGCGAAGGCGACGAGGCGCTCGGCGAAG 42842420 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/228 (69%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 111941 TGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG 112000 || || |||||||| ||||||||||| ||||| |||| || || | ||| | || Sbjct 46296019 TGGGGCCTTGGTGTGCCAGCATTGAAAAGGGTCGGTGAGGCATGTGTAAACCAGCGCTGA 46296078 Query 112001 GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCG 112060 ||||| | |||||||| | | |||| |||||||||||| ||| || || | || Sbjct 46296079 GACATGAGATGGTATGTCTTTATGGCAGACTCAATGTCTTCCTTGTGTATTCCCACTGAA 46296138 Query 112061 ACCCGCATGAACATGTACTGTGGGGTTTCCATGAGGATGCCATCGAGCCGTTGAAGA--T 112118 |||| ||| | ||||| ||||| |||| | | | || | ||| || |||| | Sbjct 46296139 ACCCTCATTAGCATGTGTTGTGGCCTTTCAACAACCTTCCCCGCAAGC--TTCAAGAGGT 46296196 Query 112119 AGCTCTTCTCAAGGGTTTTGAGACCAAAGTAACCAAAATCATAGTCCC 112166 | | ||||||| || |||| |||||||| || |||| |||||| Sbjct 46296197 AAGACCTCTCAAGAGTCTTGAAGCCAAAGTAGTCATAATCGAAGTCCC 46296244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627967720924800