Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq4 147 3e-30 seq7 136 5e-27 >seq4 Length=49548238 Score = 147 bits (162), Expect = 3e-30 Identities = 313/454 (69%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || ||||||||||||||||| ||||| || | || ||| |||||| Sbjct 42841974 TAGTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCCTGCAGCGAGATGAGCTCCATC 42842033 Query 129788 AAATCAAATGGGTTCTTTGAGTTCCAAAT-TGCTGGCACTCCAATCTGTTTGAGGAGACG 129846 | || || ||||| | ||| | || | | |||| || | | |||| || || Sbjct 42842034 CAGTCGAAGGGGTTGGCGGCGTTGTACATCTTCCTGCAC-CCGAGCGCCATGAGCAGGCG 42842092 Query 129847 ATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAG-GTTAC 129905 || | |||| |||| ||||||| ||| || |||||| |||| ||| | || Sbjct 42842093 GTCGGCGACGAACTCGATGTACTGGCTCATGAGGGCGCCGTTCATGCCGACGAGCGCGAC 42842152 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 ||||||||||| ||| |||| | ||| ||||| || || || ||||| || Sbjct 42842153 G-GGGAGCGCGTCGCAGACGAACTCGCGCTCGATGTCGACGGCGTCGGCGACGATCTCGC 42842211 Query 129966 GAATG--GTCTCCGTGCCAGGTCTATTGCGCA--AAGTCTT-GAAGAGTTCCACGGCAAA 130020 | | | | | ||| | || | | |||| | | ||| | || ||| || ||| || Sbjct 42842212 GGACGCGGGCCTCGT-CGAGCT-TGCTGCGGAGGAGGTCGTAGAGGAGG--CA-GGCGAA 42842266 Query 130021 CTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCAT 130080 || ||| || |||||||| ||||||||||| || || |||||| || || ||||| Sbjct 42842267 GTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGGCCCGGCAT 42842326 Query 130081 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTC 130140 ||| || |||||||| | |||||| || || || || ||||| ||||||||||| ||||| Sbjct 42842327 GAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTC 42842386 Query 130141 CACACACGCGAACGCAAAGAGACGCTCAGCAAAG 130174 || || ||||| || | ||| ||||| || ||| Sbjct 42842387 AACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAG 42842420 Score = 109 bits (120), Expect = 7e-19 Identities = 253/380 (67%), Gaps = 6/380 (2%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 ||||||| || ||||||||| | ||||| || || || || ||| || | ||| Sbjct 528541 ACGGTGACCTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGT 528482 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTC 14170 | ||| || || || | |||| || || | | | |||||||||||||||| ||| Sbjct 528481 CTGTTGGTGGCGGCAAGCACAATGACACCACTGTTGCCGGCAAAGCCATCCATCTCCGTC 528422 Query 14171 AAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCAGGCATACCA---CCCGCACTG 14227 ||||| || || ||||| || || | || || || || |||| || |||| Sbjct 528421 AAGAGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACCA---CCACCAAGGCCGGCACCA 528365 Query 14228 CGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGG 14287 || ||| | ||||| || ||||| ||||||||||| || || || || || | | Sbjct 528364 CGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTG 528305 Query 14288 GCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAA 14347 || || || | || ||||| || |||||||||||| || || | ||| || || Sbjct 528304 GCCTTCTCGAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGACGAAC 528245 Query 14348 TTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGG 14407 | | || | || || |||||| || | ||||| |||| ||| || ||||| Sbjct 528244 TCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGCGAGC 528185 Query 14408 AGGGTCTTCCCCGTCCCTGG 14427 ||||| || || ||||| || Sbjct 528184 AGGGTTTTACCTGTCCCGGG 528165 Score = 100 bits (110), Expect = 4e-16 Identities = 193/282 (68%), Gaps = 2/282 (1%) Strand=Plus/Minus Query 14066 TCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCCGCG 14125 |||||||| || || | || | ||| || | ||| ||| ||||| || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 14126 ATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATG 14185 || |||| || || || | ||||| |||||||| |||||||| ||||| |||| Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCTCAAAACCATCCATTTCAGTCAACAGTTGGTTGAGA 3676793 Query 14186 GTTTGTTCGCGTTCATCATTCGCAGGCATACCACCCGCACTGCGTTGCTTACCGACGGCG 14245 || || || | ||||||||| || | ||| | || | |||| |||| || || Sbjct 3676792 GTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAGCA 3676733 Query 14246 TCAATTTCATCGATGAAAACGATACATGGTTGATT-TTCACGGGCAACTTCAAAGATATC 14304 ||||||||||| | || || || || || ||| | | || | ||| ||| | ||| Sbjct 3676732 TCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGATC 3676674 Query 14305 TCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAA 14346 || |||| ||||| ||||| ||||||||||||||||| Sbjct 3676673 ACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAA 3676632 Score = 96.9 bits (106), Expect = 4e-15 Identities = 368/567 (65%), Gaps = 8/567 (1%) Strand=Plus/Plus Query 13865 GTGAT-CGTTCCGTCGCCGTCACGGACAGCGCGGATGGCACACTCATTGAGGAGGTTCGC 13923 ||||| || ||| | |||| ||| | ||| ||||||| ||| || | |||||| || Sbjct 41769260 GTGATGCGGTCCTT-GCCGCGGCGGCCGGCGAGGATGGCGGCCTCGTTCATGAGGTTGGC 41769318 Query 13924 CAAGTCGGCACCAGAGAAGCCCGTCGTTTGCTTTGCGATGGCGTGTAGCTTCACATCGTC 13983 | |||||| || ||| || | ||| || | || | || ||| ||| ||| Sbjct 41769319 GAGGTCGGCGCCGCTGAACCCGGGCGTGCGCATGGCCACCACGCTGAGCGACACGTCGGG 41769378 Query 13984 AGCCAACTTCTTGTCTCGGGC-GTGGACACCCAAAATCTTCTCGCGACCGCGCACACTGG 14042 ||| |||||||| | | || ||| || | | |||| ||| || |||||||| | Sbjct 41769379 GTCCAGCTTCTTGT-TGGAGCTGTGCACCCTGAGGATCTCCTCCCGGCCGCGCACGTCAG 41769437 Query 14043 GTAGGGACACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGA 14102 | || ||| ||| || || || ||||| || |||||||| || |||||||| |||| Sbjct 41769438 GGAGCCCGACGCTGACCTGCCGGTCGAAGCGGCCCGGGCGGAGCAGCGCGTCGTCGAGGA 41769497 Query 14103 TATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAGCCATCCA 14162 | || ||||| || || |||| || | || ||| | ||| || || |||| Sbjct 41769498 TCTCCGGCCGGTTGGTGGCACCGATCACGATGACGCCGCTGTCGCCGCTGAACCCGTCCA 41769557 Query 14163 TCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT-CGCAGGCATACCACCC 14221 |||| |||| || || || | || || || | || || || | | || | ||| Sbjct 41769558 TCTCCGTCAGCAGCTGGTTCAGCGTCTGCTCCCTCTCGTCGTTTCCCCCGCCAATG-CCC 41769616 Query 14222 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTT 14281 | | ||| || ||||||||||| || || |||||||| |||| || || || Sbjct 41769617 GTCCCGCGCTGGCGGCCGACGGCGTCGATCTCGTCGATGAAGACGAGGCACGGCGCGTTG 41769676 Query 14282 TCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCC 14341 | ||| | |||| || ||||| | | || || || || || |||||||| Sbjct 41769677 GCCTTGGCCTTGTTGAAGAGGTCCCGCACCCGCGACGCGCCCACGCCGACGAACATCTCG 41769736 Query 14342 ACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGCGATGGCTCG 14400 | || | || | | | ||| | || ||| || ||| | || || |||||||| Sbjct 41769737 ATGAACTCGGAGCCCG-ACAGCGAGAAGAATGGCACGCCGGCCTCCCCAGCGATGGCCTT 41769795 Query 14401 GGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || |||||||||||||| || Sbjct 41769796 CGCCAGCAGCGTCTTCCCCGTCCCCGG 41769822 >seq7 Length=46770411 Score = 136 bits (150), Expect = 5e-27 Identities = 119/148 (80%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 130027 GTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACC 130086 |||||| |||||||| ||||||||||| || || |||||| ||||| |||||||| || Sbjct 35944644 GTGGAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTGAGACCCGGCATGAGGCC 35944703 Query 130087 CCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACA 130146 |||||||| | |||||| || || || || ||||| ||||||||||| ||||| || || Sbjct 35944704 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAGAAGATGCCCTCGACGCA 35944763 Query 130147 CGCGAACGCAAAGAGACGCTCAGCAAAG 130174 ||||| || | ||| ||||| || ||| Sbjct 35944764 GGCGAAGGCGACGAGGCGCTCGGCGAAG 35944791 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618371903157280