Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq7 154 2e-32 seq4 150 2e-31 >seq7 Length=46770411 Score = 154 bits (170), Expect = 2e-32 Identities = 123/148 (83%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || || ||||| ||||||||||| || ||||| Sbjct 35944791 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTT 35944732 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| |||||| |||||||||||| Sbjct 35944731 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGA 35944672 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| |||||| Sbjct 35944671 GCTCATCTCCCGCGACGAGGGCCTCCAC 35944644 >seq4 Length=49548238 Score = 150 bits (166), Expect = 2e-31 Identities = 122/148 (82%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 94797 CTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTT 94856 ||| || ||||| ||| |||| || || || |||||||| ||||||||||| || ||||| Sbjct 42842420 CTTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTT 42842361 Query 94857 CTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||||| || | |||||||||||||| || |||||||| || ||| |||||||||||| Sbjct 42842360 CTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGA 42842301 Query 94917 GCTTATCTCTCGTGACGAGGGACTCCAC 94944 ||| ||||| || |||||||| || ||| Sbjct 42842300 GCTCATCTCCCGCGACGAGGGCCTGCAC 42842273 Score = 131 bits (144), Expect = 2e-25 Identities = 253/366 (69%), Gaps = 8/366 (2%) Strand=Plus/Minus Query 9527 TCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGCG 9586 |||||||| || || | ||| | ||| ||| | ||| ||| | || || || || || Sbjct 3676912 TCAAAGCGTCCAGGCCTAAGTAAAGCGGAATCCAAGATGTCAGCTCGGTTAGTGGCAGCA 3676853 Query 9587 ATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAA 9644 || |||| ||| || |||||| | ||||||||||||| || ||||| |||||||| | Sbjct 3676852 ATAACAATAATTCCAGTGTTTCCCT--CAAAACCATCCATTTCAGTCAACAGTTGGTTGA 3676795 Query 9645 TAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCAGCACTGCGTTGCTTTCCCACGG 9704 ||| || |||| ||||||||| | | ||| | || | |||| | || || | Sbjct 3676794 GAGTCTGCTCCCTTTCATCATTTCCACCACCAATACCTGTACCTCTTTGCCTACCAACAG 3676735 Query 9705 CATCAATCTCATCAATGAAGACGATGCATGGTTGATT-TTCGCGAGCGACTTCAAAGAGA 9763 ||||||| ||||||| || || ||||| || ||| | | | | ||| ||| ||| Sbjct 3676734 CATCAATTTCATCAACAAACACTATGCAAGGAGCATTCTCCTTGGCCTTCTTGAAA-AGA 3676676 Query 9764 TCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGAACAT 9823 || || || || || || ||||||||||||||||||||||| | | | | ||| || Sbjct 3676675 TCACGAACTCGGGAAGCACCAACACCAACAAACATCTCCACAAACTCAGAGCCCGAA-AT 3676617 Query 9824 TG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGT 9882 || || || || ||| || || || ||||| || ||| || | || ||||| || Sbjct 3676616 TGAGAAAAATGGCACACCAGCCTCTCCAGCAATTGCCTTGGCAAGCAATGTTTTACCAGT 3676557 Query 9883 ACCTGG 9888 || || Sbjct 3676556 TCCAGG 3676551 Score = 86.0 bits (94), Expect = 7e-12 Identities = 251/385 (65%), Gaps = 24/385 (6%) Strand=Plus/Minus Query 9517 GATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATT 9576 || || ||||||||| | |||||||| || || || || || | ||| | || Sbjct 528536 GACCTGACGATCAAACCTTCCTGGACGCAGAAGAGCAGAGTCCAGCACATCGGGTCTGTT 528477 Query 9577 CGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9634 || ||||| | |||| | ||| |||| | |||| ||||||||||| ||||| Sbjct 528476 GGTGGCGGCAAGCACAATGACACCACTGTTGCCGG--CAAAGCCATCCATCTCCGTCAAG 528419 Query 9635 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCACCA------GCACTG 9688 || |||||||| || || |||| || || || | ||||||| |||| Sbjct 528418 AGCTGGTTAATGGTCTGCTCCCTCTCGTCGTTACC------ACCACCAAGGCCGGCACCA 528365 Query 9689 CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGG----TTGATTTTC 9744 || ||| | || || |||||||||||||| |||||||| ||||| || ||| || Sbjct 528364 CGCTGCCTCCCGACAGCATCAATCTCATCGATGAAGACAATGCAGGGCGCCTTGGCCTTG 528305 Query 9745 GCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCAC 9804 || | || || || || || || | ||| || ||||| || || | ||| || Sbjct 528304 GCCTTC----TCGAAAAGGTCGCGCACCCTGGAGGCACCGACACCGACGAAGAGCTCGAC 528249 Query 9805 AAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGC 9864 || | || || | || || |||||| || | ||||| || | ||| || || Sbjct 528248 GAACTCTGACGCCGCGCAGGAGAAGAAGGGTACCCCGGCCTCACCAGCGACGGCACGCGC 528189 Query 9865 GAGAAGAGTCTTACCCGTACCTGGC 9889 ||| || || ||||| || || ||| Sbjct 528188 GAGCAGGGTTTTACCTGTCCCGGGC 528164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583201103257120