Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq7 201 1e-46 seq4 194 2e-44 >seq7 Length=46770411 Score = 201 bits (222), Expect = 1e-46 Identities = 581/875 (66%), Gaps = 33/875 (4%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || ||||||||| | | |||| | || ||||| ||| | | || |||||| Sbjct 35945204 TTCCCGATCCGGTACCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 35945145 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| | |||||| | | ||| | | |||||| | ||| | Sbjct 35945144 ACGGCCGAGGAGGTGGACCTCTCGGCCGACGCGCGCCACTGGGACGCGGCGCTCTCCCCC 35945085 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || |||||| || || ||||||||||| || || || || ||| Sbjct 35945084 GACGAGCGCCACTTCATCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 35945025 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| || || ||| | || ||||| || | Sbjct 35945024 CTCGAGAACCTCGCCTCCCGCTTCATGTCC---GACGTGCAGGTCGCGGAGGCGCGCGCC 35944968 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 35944967 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 35944909 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 || | | || || | ||||||| | || ||||| ||||| || || Sbjct 35944908 GGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 35944849 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GA-GTCCTGGAGCATCA 59972 |||||| || | || || || |||||||||| ||||| || | | ||||| Sbjct 35944848 CCCCGCCGTGCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGGGAGCGC-- 35944791 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 35944790 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCGGGCTCCTTC 35944731 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| |||||||||||||| || | |||||||||||| Sbjct 35944730 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGTCTCACCTTCTCCAACGAG 35944671 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGAC-GCTCTATTCACACCT 60151 || || ||||| |||||||||||||| || || || || | ||||| | ||| Sbjct 35944670 CTCATCTCCCGCGACGAGGGCCTCCACTGCGACTTCGC-CTGCCTCCTCTACGATCTCCT 35944612 Query 60152 ATTGGAAAAATGCCCTTCCAAGG--ATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGT 60208 | || || | | | || | | | |||| || | | | | | || | Sbjct 35944611 CCGCGGCAA--GCTCGACGAGGGCCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGACAT 35944555 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||||| || || ||||| || | ||| | || ||| ||| || Sbjct 35944554 CGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGAATGAACGGCGGCCT 35944495 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGG--AGAA 60323 |||| |||||||| |||| ||||| |||||| |||||||| | | || | || Sbjct 35944494 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGC---GCTGGGCCACAA 35944438 Query 60324 GGACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGG 60383 | | || || ||| ||||| ||||||||||||||| ||||||| || | || Sbjct 35944437 GAA--GATGTATAACGTCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGC 35944380 Query 60384 AAGACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||||| |||||||| |||||||| || Sbjct 35944379 AAGACCAACTTCTTCGAGAAGCGCGTCGGGGAGTA 35944345 >seq4 Length=49548238 Score = 194 bits (214), Expect = 2e-44 Identities = 579/873 (66%), Gaps = 29/873 (3%) Strand=Plus/Minus Query 59562 TTTCCTATACGGTACCCGGATCTGTGGGCCCTGTATAAGAAAGCGATCGGTTCATTCTGG 59621 || || || || | |||| | | |||| | || ||||| ||| | | || |||||| Sbjct 42842833 TTCCCGATCCGTTTCCCGCAGATCTGGGAGTTCTACAAGAAGGCGGTGGCGTCCTTCTGG 42842774 Query 59622 TCCGTCGAGGAGATTGACCTCGCCGGAGACCTGAAGGATTGGGACAAG---CTCAATTAC 59678 | | ||||||| | |||||| ||| ||| | | | |||||| || || | Sbjct 42842773 ACGGCCGAGGAGGTGGACCTCTCCGCCGACGCGCGGCACTGGGACGAGGCGCTGTCCCCC 42842714 Query 59679 GACGAGCAGCATTTCATCAAGATGGTCCTGGCCTTCTTCGCGGCGAGTGATGGAATTGTG 59738 ||||||| || ||| || || || ||||||||||| || || || || ||| Sbjct 42842713 GACGAGCGCCACTTCGTCTCCCACGTGCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTG 42842654 Query 59739 ATGGAAAATATAGACATGAACTTT---TCCAAGGATGTCCAGATTGCCGAGGCCCGGTCG 59795 | || || | | | ||| ||| || || ||| | |||||||| ||| | Sbjct 42842653 CTCGAGAACCTCGCTTCGCGCTTCATGTCC---GACGTGCAGGTCGCCGAGGCGCGGGCC 42842597 Query 59796 TTCTACGCGTATCAG-TCGTTCAACGAGTCTATCCACTCCGAGACGTACTCGCTCATGAT 59854 ||||||| | ||| ||| || |||| |||||||| |||| ||||||||| || | Sbjct 42842596 TTCTACGGCTTCCAGATCGC-CATCGAGAACATCCACTCGGAGATGTACTCGCTGCTGCT 42842538 Query 59855 CGATAAGTTGGTCAAGGATCCGGAAGAGAAGGCTGGTCTGTTCCGTGCCATAGAGACGTC 59914 ||| | | || || | ||||||| | || ||||| ||||| || || Sbjct 42842537 CGAGACCTACATCCGCGACGGCGCCGAGAAGGACCGCCTCTTCCGCGCCATCGACACCGT 42842478 Query 59915 CCCCGCAGTTAAACAAAAAGCAGAATGGGCCATGCAGTGGAT-GAGTCCTG-GAGCATCA 59972 ||||| || | || || || |||||||||| ||||| || | | |||| Sbjct 42842477 GCCCGCCGTCCGCCGCAAGGCCGACTGGGCCATGCGCTGGATCGACGGCGGCGAGCGC-- 42842420 Query 59973 TTTGCACAACGTCTCATAGCTTTTGCATGCGTGGAAGGAATCTTCTTCTCTGGCTCGTTC 60032 || || | || ||| | || || || ||||| || || ||||||||||| ||||| ||| Sbjct 42842419 TTCGCCGAGCGCCTCGTCGCCTTCGCCTGCGTTGAGGGCATCTTCTTCTCGGGCTCCTTC 42842360 Query 60033 TGTGCTATTTTCTGGCTCAAAAAGCGTGGCCTCATGCCGGGCCTGAGTTTCTCCAACGAG 60092 || || || ||||||||||| ||||| ||||||||||||||||| | |||||||||||| Sbjct 42842359 TGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGCCTCACCTTCTCCAACGAG 42842300 Query 60093 CTGATTTCCCGGGACGAGGGCCTCCATCAGGAGTTTGCAGTGACGCTCTATTCACACCT- 60151 || || ||||| ||||||||||| || || || || || | | || | | |||| Sbjct 42842299 CTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTCGC-CTGCCTC-CTCTAC-GACCTC 42842243 Query 60152 ATTGGAAAAATGCCCTTCCAAG--GATATTCACAAGATTGT-TCAGTGGGCTTGTGAAGT 60208 | | | | || | | | | | | | |||| || | | | | | || | Sbjct 42842242 CTCCGCAGCAAGCTCGACGAGGCCCGCGTCCGCGAGATCGTCGCCGACGCCGT-CGACAT 42842184 Query 60209 GGAGAGCGAGTTCATCACAGAAGCGCTTCCATGCAAACTCATAGGTATGGACGCTGGAGA 60268 ||| |||||||| || || ||||| || | ||| | || ||| ||| | Sbjct 42842183 CGAGCGCGAGTTCGTCTGCGACGCGCTCCCCGTCGCGCTCGTCGGCATGAACGGCGCCCT 42842124 Query 60269 AATGACGCAGTACATTCAGTTTGTCGCGGACCGC---CTCATGGCCCAGTTTGGAGAAGG 60325 |||| |||||||| |||| ||||| |||||| |||||||| | | || | ||| Sbjct 42842123 CATGAGCCAGTACATCGAGTTCGTCGCCGACCGCCTGCTCATGGCGC--TCGGGTGCAGG 42842066 Query 60326 ACCAATTTACGGCGTGAATAACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAA 60385 | || ||| || ||||| ||||||||||||||| ||||||| || | || || Sbjct 42842065 A-AGATGTACAACGCCGCCAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGCAA 42842007 Query 60386 GACCAACTTCTTTGAGAAGCGGGTCGGGGATTA 60418 |||||||||||| |||||||| ||||| || || Sbjct 42842006 GACCAACTTCTTCGAGAAGCGCGTCGGCGACTA 42841974 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548468658486720