Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq7 145 8e-30 seq4 145 8e-30 seq9 95.1 1e-14 seq5 93.3 5e-14 seq3 89.7 6e-13 seq2 89.7 6e-13 seq1 89.7 6e-13 >seq7 Length=46770411 Score = 145 bits (160), Expect = 8e-30 Identities = 331/491 (67%), Gaps = 9/491 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 35944687 AGACCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 35944746 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAA-CGGTGCATCGGAAGT 74923 |||||||| ||||| || || |||||||| ||||| | ||||| || | | | | || Sbjct 35944747 AAGATGCCCTCGACGCAGGCGAAGGCGACGAGGCGCTCGGCGAAGCGCTCC--CCGCCGT 35944804 Query 74924 C-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCTT 74982 | ||||| | ||||| || || || || || || ||||| || ||||| || Sbjct 35944805 CGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGCACGGCGGGGACGGTGTCGATGGCGC 35944864 Query 74983 GGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTACG 75042 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 35944865 GGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCCAGCAGCAGCGAGTACA 35944924 Query 75043 TCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGCA 75101 ||||||| || || |||| || ||| |||| | ||||||| | |||||||| || Sbjct 35944925 TCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCGCGCGCCTCCGCG 35944983 Query 75102 ATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGCG 75161 | ||| || || || | ||| ||||| | ||||||||||| |||||| Sbjct 35944984 ACCTGCACGTCGGACATGAAGCGGGAGGCGAGGTTCTCGAGCACGATGCCGTCGGAGGCG 35945043 Query 75162 GCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTCC 75218 ||||| || || || || ||| ||||||||||| ||| | ||| |||| Sbjct 35945044 GCGAAGAAGGCGAGCACGTGGGAGATGAAGTGGCGCTCGTCGGGGGAGAGCGCCGCGTCC 35945103 Query 75219 CAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGCC 75278 || | | ||| ||| | || | ||||||| |||||||||| | | | |||| Sbjct 35945104 CAGTGGCGCGCGTCGGCCGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGCC 35945163 Query 75279 TTTTTGTACAA 75289 || ||||| || Sbjct 35945164 TTCTTGTAGAA 35945174 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 37535248 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 37535307 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 37535308 TGAGCTACGAAAGC 37535321 >seq4 Length=49548238 Score = 145 bits (160), Expect = 8e-30 Identities = 332/492 (67%), Gaps = 11/492 (2%) Strand=Plus/Plus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 ||||| ||||| || || |||||||| | ||| |||||||| |||||||| || |||| Sbjct 42842316 AGGCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAGGAGCCCGAGAAG 42842375 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTGCATCG--GAAG 74922 |||||||| || || || || |||||||| ||||| | ||||| | || ||| | | Sbjct 42842376 AAGATGCCCTCAACGCAGGCGAAGGCGACGAGGCGCTCGGCGAA--GCGC-TCGCCGCCG 42842432 Query 74923 TC-ATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCAGGGACAGTATCGATCGCT 74981 || ||||| | ||||| || || || || ||| || || || || ||||| || Sbjct 42842433 TCGATCCAGCGCATGGCCCAGTCGGCCTTGCGGCGGACGGCGGGCACGGTGTCGATGGCG 42842492 Query 74982 TGGAAGAGGCTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGTAC 75041 ||||||||| ||||||| || || || | | || | || || |||||| Sbjct 42842493 CGGAAGAGGCGGTCCTTCTCGGCGCCGTCGCGGATGTAGGTCTCGAGCAGCAGCGAGTAC 42842552 Query 75042 GTCTCCGAATGAATCGACTCGTTGAACGA-CTGGTACGCGTAGAAAGACCGCGCCTCTGC 75100 ||||||| || || |||| || ||| |||| | ||||||| | ||||||||| || Sbjct 42842553 ATCTCCGAGTGGATGTTCTCGATG-GCGATCTGGAAGCCGTAGAAGGCCCGCGCCTCGGC 42842611 Query 75101 AATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGGC 75160 | ||| || || || | ||| ||||| | ||||||||||| ||||| Sbjct 42842612 GACCTGCACGTCGGACATGAAGCGCGAAGCGAGGTTCTCGAGCACGATGCCGTCGGAGGC 42842671 Query 75161 GGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAG---TTTGTC 75217 |||||| || || || || || ||||||||||| ||| | || | ||| Sbjct 42842672 GGCGAAGAAGGCGAGCACGTGGGAGACGAAGTGGCGCTCGTCGGGGGACAGCGCCTCGTC 42842731 Query 75218 CCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCGC 75277 ||| | | | ||| | | | || | ||||||| |||||||||| | | | ||| Sbjct 42842732 CCAGTGCCGCGCGTCGGCGGAGAGGTCCACCTCCTCGGCCGTCCAGAAGGACGCCACCGC 42842791 Query 75278 CTTTTTGTACAA 75289 ||| ||||| || Sbjct 42842792 CTTCTTGTAGAA 42842803 >seq9 Length=72259479 Score = 95.1 bits (104), Expect = 1e-14 Identities = 69/79 (87%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 79620 CAGACTGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-A 79678 |||| |||||||| |||| | || |||| ||||||||||||||||||||||||||| | Sbjct 64754137 CAGATTGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAA 64754196 Query 79679 CCAATTGAGCTACGAAAGC 79697 |||| |||||||||||||| Sbjct 64754197 CCAACTGAGCTACGAAAGC 64754215 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 4298817 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 4298758 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 4298757 TGAGCTACGAAAGC 4298744 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 9100725 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 9100666 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 9100665 TGAGCTACGAAAGC 9100652 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 5e-14 Identities = 67/76 (88%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 54358469 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 54358410 Query 79684 TGAGCTACGAAAGCAA 79699 |||||||||||||||| Sbjct 54358409 TGAGCTACGAAAGCAA 54358394 >seq3 Length=64463019 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 2810552 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 2810611 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 2810612 TGAGCTACGAAAGC 2810625 Score = 86.0 bits (94), Expect = 7e-12 Identities = 64/74 (86%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||| ||| |||| || || |||| ||||||||||||||||||||||||||| ||||| Sbjct 59668362 TGCTCTCGTTGAGATTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 59668421 Query 79684 TGAGCTACGAAAGC 79697 |||||||||| ||| Sbjct 59668422 TGAGCTACGAGAGC 59668435 >seq2 Length=61504503 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1451113 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1451054 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1451053 TGAGCTACGAAAGC 1451040 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Minus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 1496187 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 1496128 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 1496127 TGAGCTACGAAAGC 1496114 >seq1 Length=61571842 Score = 89.7 bits (98), Expect = 6e-13 Identities = 65/74 (88%), Gaps = 1/74 (1%) Strand=Plus/Plus Query 79625 TGCTTTCGATGAGCTTTGATCTCATTACCTCCCGCTTACTAAACGGGTGCTCT-ACCAAT 79683 |||||||| |||| | || |||| ||||||||||||||||||||||||||| ||||| Sbjct 50605852 TGCTTTCGTTGAGAGTCGAACTCAAGACCTCCCGCTTACTAAACGGGTGCTCTAACCAAC 50605911 Query 79684 TGAGCTACGAAAGC 79697 |||||||||||||| Sbjct 50605912 TGAGCTACGAAAGC 50605925 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547159992442400