Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_028663.1 Length=188632 Score E Sequences producing significant alignments: (Bits) Value seq2 178 2e-39 seq4 152 6e-32 >seq2 Length=61504503 Score = 178 bits (196), Expect = 2e-39 Identities = 266/378 (70%), Gaps = 5/378 (1%) Strand=Plus/Minus Query 176206 TTTATCGTTGCATTTATTGCAGCACCACCTGTCGATATCGACGGTATTCGCGAACCAGTA 176265 ||||| | || || || || || || || || ||||| || |||||||| || || || Sbjct 2078250 TTTATTATCGCTTTCATCGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTT 2078191 Query 176266 GCAGGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAAC 176325 | || ||| |||| ||||||||||| || ||||| || || | | || | || Sbjct 2078190 TCTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCG 2078131 Query 176326 GCAATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 176385 || |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | ||| Sbjct 2078130 GCGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATAC 2078071 Query 176386 AATGGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATG 176445 ||||| || || || | || |||| | |||||| | | ||| | | ||| ||| Sbjct 2078070 AATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATG 2078011 Query 176446 GGACGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATAC 176505 || || | ||||||||||||| | | || || |||||||||||||| ||||||||| Sbjct 2078010 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATAT 2077951 Query 176506 TCTGCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGT-----CTATCCATTCGGTCAAG 176560 || || || || | || || | || |||||| | | |||| | | ||||||| Sbjct 2077950 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTCTATTGGTCAAG 2077891 Query 176561 GATCTTTCTCTGATGGTA 176578 || ||| ||||||| || Sbjct 2077890 GAAGTTTTTCTGATGCTA 2077873 >seq4 Length=49548238 Score = 152 bits (168), Expect = 6e-32 Identities = 224/316 (71%), Gaps = 1/316 (0%) Strand=Plus/Plus Query 176269 GGATCTCTACTCTATGGAAACAACATCATCTCAGGAGCAGTCGTCCCAAGCTCAAACGCA 176328 || ||| |||| ||||||||||| || ||||| || || | | || | || || Sbjct 24272525 GGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCG 24272584 Query 176329 ATCGGACTACACTTCTACCCAATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAAT 176388 |||||| | ||||| |||||||| |||||||| ||| | ||||| || ||| | |||||| Sbjct 24272585 ATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAAT 24272644 Query 176389 GGAGGACCATACCAACTCGTTGTATTCCACTTCCTTATCGGTATCTCAGCTTACATGGGA 176448 || || || || | || |||| | |||||| | | ||| | | ||| ||||| Sbjct 24272645 GGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGT 24272704 Query 176449 CGCCAATGGGAACTTAGTTACAGACTAGGCATGCGTCCTTGGATCTGTGTTGCATACTCT 176508 | | ||||||||||||| | | || || |||||||||||||| ||||||||| || Sbjct 24272705 CATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCA 24272764 Query 176509 GCACCAGTATCTGCAGCGATGGCAGTTTTCCTCGTCTATCCATTCGGTCAAGGATCTTTC 176568 || || || | || || | || |||||| | | | || | ||||||||| ||| Sbjct 24272765 GCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTT 24272824 Query 176569 TCTGATGGTAT-GCCT 176583 ||||||| ||| |||| Sbjct 24272825 TCTGATGCTATAGCCT 24272840 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603432632348160