Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8 104 2e-17 >seq8 Length=47074253 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 34602 TCTGCCAATTCTACGTCGCGAATGGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAG 34661 ||| ||| || || || | |||||||||||| ||||||||| | |||||||| || | || Sbjct 29221466 TCTTCCAGTTTTATGTTGAGAATGGGGAGCTATCCTGCCAGATGTATCAACGCTCTGCAG 29221525 Query 34662 ACATGGGGTTAGGGGTGCCGTTCAACATTGCTAGTTACGCTCTGCTCACGTACATGATCG 34721 ||||||| | || || || ||||||||||| || |||| ||||| |||||||| | Sbjct 29221526 ACATGGGACTTGGTGTTCCATTCAACATTGCATCATATTCTCTCCTCACTTACATGATTG 29221585 Query 34722 CTCATGT 34728 |||| || Sbjct 29221586 CTCAAGT 29221592 Score = 104 bits (114), Expect = 2e-17 Identities = 99/127 (78%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 6617 ACATGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAAC 6676 || ||||| |||||||| ||||| |||| || ||||||||||| || || || | Sbjct 29221592 ACTTGAGCAATCATGTAAGTGAGGAGAGAATATGATGCAATGTTGAATGGAACACCAAGT 29221533 Query 6677 CCCATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAAT 6736 ||||||||| | || |||||||| | ||||||||| |||||||||||| | || || || Sbjct 29221532 CCCATGTCTGCAGAGCGTTGATACATCTGGCAGGATAGCTCCCCATTCTCAACATAAAAC 29221473 Query 6737 TGGCAGA 6743 ||| ||| Sbjct 29221472 TGGAAGA 29221466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448216520343360