Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq4 98.7 7e-16 seq4347 95.1 8e-15 seq211 93.3 3e-14 seq7 93.3 3e-14 seq1 93.3 3e-14 >seq4 Length=49548238 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| || || || ||||| || || ||||| ||| || Sbjct 2204868 ATGCAGATTTTTGTCAAGACCCTCACCGGCAAGACCATCACCCTTGAGGTTGAGTCCTCG 2204927 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || ||||| || Sbjct 2204928 GACACCATCGACAACGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCCCCAGACCAG 2204987 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || || | ||||| | | || |||||| Sbjct 2204988 CAGCGCCTTATCTTTGCCGGCAAGCAGCTAGAGGATGGCCGCACCCTTGCTGACTACAAC 2205047 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || |||||||| Sbjct 2205048 ATCCAGAAGGAGTCCAC 2205064 >seq4347 Length=1781 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| ||||| || || ||| | Sbjct 784 ATGCAGATTTTCGTTAAGACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 843 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 844 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 903 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||| ||||| || ||||| |||| ||||| | | ||| |||||| Sbjct 904 CAGAGGCTCATCTTTGCAGGCAAGCAGCTGGAGGACGGCCGCACCCTTGCCGACTACAAC 963 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 964 ATCCAGAAGGAG 975 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| |||||||| || || || ||||| ||||| || || ||| | Sbjct 328 ATGCAGATCTTTGTTAAGACCCTCACTGGCAAGACCATCACCCTCGAGGTGGAGTCCTCC 387 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 388 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 447 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || ||||| || | |||||| | | || |||||| Sbjct 448 CAGAGGCTCATCTTTGCCGGCAAGCAGCTGGAGGATGGCCGCACTCTTGCGGACTACAAC 507 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 508 ATCCAGAAGGAG 519 >seq211 Length=21435 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||| || |||||||| | | Sbjct 1512 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAGACCATCACACTTGAAGTTGAGAGCTCA 1571 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || || ||||| ||||| | || ||||| || Sbjct 1572 GACACGATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA 1630 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| || | || ||||| Sbjct 1631 GCAGCGGCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGCACATTGGCAGACTACAA 1690 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 1691 CATTCAGAAGGAATCTAC 1708 >seq7 Length=46770411 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||| || |||||||| | | Sbjct 21031059 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAGACCATCACACTTGAAGTTGAGAGCTCA 21031000 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || || ||||| ||||| | || ||||| || Sbjct 21030999 GACACGATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA 21030941 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| || | || ||||| Sbjct 21030940 GCAGCGGCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGCACATTGGCAGACTACAA 21030881 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 21030880 CATTCAGAAGGAATCTAC 21030863 >seq1 Length=61571842 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||| || || |||||||| ||||| || ||||| || |||||||| | | Sbjct 52872085 ATGCAGATTTTTGTCAAGACCCTCACTGGAAAGACCATCACACTTGAAGTTGAGAGCTCA 52872026 Query 23671 GACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 ||||| |||| || |||| | || || ||||| ||||| | || ||||| || Sbjct 52872025 GACACGATTGACAACGTTAAGGC-CAAGATCCAGGACAAGGAAGGCATCCCACCAGACCA 52871967 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 ||||| | || ||||| || || || || || || | ||||| || | || ||||| Sbjct 52871966 GCAGCGGCTTATCTTTGCTGGGAAGCAGCTCGAGGATGGGCGCACATTGGCAGACTACAA 52871907 Query 23790 CATACAAAAAGAGTCCAC 23807 ||| || || || || || Sbjct 52871906 CATTCAGAAGGAATCTAC 52871889 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| || ||||| |||||||| || || || ||||| ||||| || || ||| | Sbjct 3009877 ATGCAGATCTTTGTTAAGACCCTCACCGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 3009818 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 3009817 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3009758 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || ||||||||||| || || || |||| |||||| | | || |||||| Sbjct 3009757 CAGAGGCTCATCTTTGCCGGCAAGCAGCTTGAGGACGGACGCACCCTTGCTGACTACAAC 3009698 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 3009697 ATCCAGAAGGAG 3009686 Score = 86.0 bits (94), Expect = 4e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||||||||||||||| |||||||| || || || ||||| || || || || ||| | Sbjct 3014732 ATGCAGATTTTCGTTAAGACCCTCACAGGCAAGACCATCACCCTTGAGGTGGAGTCCTCC 3014673 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || ||||| || || | || || || || Sbjct 3014672 GACACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 3014613 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 |||||| | || ||||| ||||| || |||| || | ||||| | | || |||||| Sbjct 3014612 CAGCGTCTGATCTTTGCTGGCAAGCAGTTGGAGGATGGGCGCACCCTTGCGGACTACAAC 3014553 Query 23791 ATACAAAAAGAG 23802 || || || ||| Sbjct 3014552 ATTCAGAAGGAG 3014541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337975869599504