Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq5 102 1e-16 seq4 95.1 2e-14 seq1 84.2 3e-11 >seq5 Length=59822759 Score = 102 bits (112), Expect = 1e-16 Identities = 155/221 (70%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 || ||||||||||||||||| ||| ||||| ||| | || |||||||| ||| || Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||| ||| || ||| ||| | ||| || |||| ||||| ||||| Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| |||| | || |||||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATACAGATGAGGAAACAGCT 16576067 >seq4 Length=49548238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||| ||||| | ||| | || || | ||| | || | ||||| |||| ||| || Sbjct 46295706 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 46295765 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || |||||||||||||| ||| ||||| ||| | || || ||||| || || Sbjct 46295766 ATTGGACGTTCCATTTGTTCCCCGAATGTAACTCCCAGTAGCACGGATATTGTGAACTGA 46295825 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || ||| | ||| || |||| ||||| || || Sbjct 46295826 GACACCAATTCCTCCAGCTGATTTGCTTATCACAGCACATTCCTTCAGAGTATCATAAAT 46295885 Query 78338 ACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| || |||||||| ||||| | ||| |||||||| Sbjct 46295886 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 46295927 >seq1 Length=61571842 Score = 84.2 bits (92), Expect = 3e-11 Identities = 151/221 (68%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 78159 CCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCG 78218 || || ||||| | ||| | || || | ||| |||| | | ||| |||| ||| || Sbjct 60058551 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 60058492 Query 78219 TTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGAT 78278 ||||| |||||||||||||| ||| ||||| ||| | || ||||| || ||| ||| Sbjct 60058491 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATGTTGTGAATTGAT 60058432 Query 78279 ATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGATA 78338 | || |||||||| || || ||| ||| || | | ||||| || || Sbjct 60058431 ACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAATT 60058372 Query 78339 CCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCT 78379 ||||| ||||| ||||| ||||| | ||| || ||||| Sbjct 60058371 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 60058331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694597700648320