Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq4 95.1 2e-14 seq5 93.3 6e-14 seq1 87.8 3e-12 >seq4 Length=49548238 Score = 95.1 bits (104), Expect = 2e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||| ||||| | ||| | ||||| | ||| | || | ||||| |||| ||| || Sbjct 46295706 ACCTCCTTGATCAACATAACGAGCAGTATCATTGAAGACACGTAACATAGGAACAATCCC 46295765 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || || ||||||||||| ||| ||||| ||| ||||| ||||| || || Sbjct 46295766 ATTGGACGTTCCATTTGTTCCCCGAATGTAACTCCCAGTAGCACGGATATTGTGAACTGA 46295825 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| || | |||||| |||| || ||||| || Sbjct 46295826 GACACCAATTCCTCCAGCTGATTTGCTTATCACAGCACATTCCTTCAGAGTATCATAAAT 46295885 Query 76933 GCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| ||||| | ||| |||||||| Sbjct 46295886 TCCCTCAATGCTGTCATCTTTCATGCAGATAAGGAAACAGCT 46295927 >seq5 Length=59822759 Score = 93.3 bits (102), Expect = 6e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | || || | ||| | || | ||||| |||| ||| || Sbjct 16576287 CCACCTTGATCAACATAACGAGCGGTATCATTGAAGACACGTAACATAGGAACAATTCCA 16576228 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 || ||||| ||||||||||| ||| ||||| ||| ||||||||||| ||| || Sbjct 16576227 TTGGATGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCACGAATATTGTGAATTGAG 16576168 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||| ||| || |||| || | |||||| |||| || |||||||| Sbjct 16576167 ACACCAATTCATCCAGCTTATTTACTTATGACAGCACATTCCTTCAGGGTATCATAGATT 16576108 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| || || ||||| |||| | || |||||||| Sbjct 16576107 CCCTCAATGCTGTCATCTTTCATACAGATGAGGAAACAGCT 16576067 >seq1 Length=61571842 Score = 87.8 bits (96), Expect = 3e-12 Identities = 152/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 76754 CCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCCG 76813 || || ||||| | ||| | ||||| | ||| |||| | | ||| |||| ||| || Sbjct 60058551 CCACCTTGATCAACATAACGAGCAGTATCATTGAAAACACGTAGCATAGGAACAATTCCA 60058492 Query 76814 TTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGAT 76873 ||||| || ||||||||||| ||| ||||| ||| || ||||| || ||| ||| Sbjct 60058491 TTAGAAGTTCCATTTGTTCCTCGAATGTAACTCCCAGTAGCTCGAATGTTGTGAATTGAT 60058432 Query 76874 AGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATG 76933 | || |||||||| || ||| || |||||| | | || ||||| || Sbjct 60058431 ACACCAATTCCTCCAGCAGATTTGCTTATCGCAGCACATTCTGAGAGAGTATCATAAATT 60058372 Query 76934 CCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCT 76974 ||||| ||||||||||| ||||| | ||| || ||||| Sbjct 60058371 CCCTCAATACTATCATCTTTCATGCAGATAAGGAAGCAGCT 60058331 Score = 87.8 bits (96), Expect = 3e-12 Identities = 117/157 (75%), Gaps = 8/157 (5%) Strand=Plus/Minus Query 76492 CTCTCTTTCATATTGTGTATATAACCG-TTC--AAATTCATCTCCCCAAACATCATCCAA 76548 |||||||||||||| ||| || | ||| ||| ||||||||||| |||| | || Sbjct 60059022 CTCTCTTTCATATT---TATGGTACAGATTCTGAAACTCATCTCCCCAGCAATCAGCTAA 60058966 Query 76549 ACCAGGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTT-AACCCGTTTCA 76607 ||| ||| |||||| ||||| | || |||||||| |||| | | || |||| || || Sbjct 60058965 ACCTGGAGCTTCATTGGGACAAAACAGTGACCACTGTCCAT-TGCATTGTACCCTTTCCA 60058907 Query 76608 TAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 | || |||||||| ||||| |||||| || ||||| Sbjct 60058906 TGAATAGATCAGGAATCCACAGAGCATAGAAAAGATC 60058870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712861431164160