Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031235.1 Length=194437 Score E Sequences producing significant alignments: (Bits) Value seq2 237 2e-57 seq4 183 4e-41 >seq2 Length=61504503 Score = 237 bits (262), Expect = 2e-57 Identities = 338/473 (71%), Gaps = 7/473 (1%) Strand=Plus/Minus Query 183195 CTTCTGCGAATGGATTACCAGCACTAACAACCGCCTCTATGTGGGTTGGTTTGGCACACT 183254 ||||||| | ||||| || ||||| | ||||| || || | || ||||| || | Sbjct 2078344 CTTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTT 2078285 Query 183255 GATGATTCCAACTCTGTTGGCAGCAACCATCTGC-TTCATCGTTGCCTTCGTCGCTGCTC 183313 |||||| || || | ||| | ||||| |||| || || | || ||| ||||||| | Sbjct 2078284 GATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 183314 CTCCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGGTCGCTCATGTATGGAAACA 183373 |||| || || || || || || || || || ||| |||| || | | |||||||||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 183374 ACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCACTTCTATCCCA 183433 | || ||||||||||| || ||||| |||| || || ||| | ||||| || || | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 183434 TCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTACCAACTCGTAG 183493 | |||||||| ||||| | ||||||||| | || || || || ||||| | || | | Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 183494 TCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAATTGTCTTACC 183553 | | |||||| | |||| || || || |||||||||||||||||| | || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 183554 GTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCTGCTGCAACCG 183613 |||| ||||||||||||||||| |||||| ||| || |||||||| ||||| || | Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 183614 CTGTCTTCCTGGT-----CTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTA 183661 |||| ||| || | |||| || | |||||||| |||| ||||| || Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGCTA 2077873 Score = 89.7 bits (98), Expect = 6e-13 Identities = 128/179 (72%), Gaps = 6/179 (3%) Strand=Plus/Minus Query 171000 TATATTCTTGATGCTGCTGAAGAAGCAGGATTTGATTTGAACTATTCGTGTCGTGCTGGT 171059 || || || || |||||||| || ||| | || || || ||||| |||||||| Sbjct 5809819 TACATCCTGGAGTCTGCTGAATCCGCTGGAGTGGAGCTGCCGTACTCGTGCCGTGCTGGC 5809760 Query 171060 GCTTGTTCGACCTGTGCTGGGAAAATTGAGAGTGGTTCTGTTGATCAATCCGATCAATCT 171119 ||||| || ||||| ||||| ||||||||| |||| || ||||| || ||| ||| Sbjct 5809759 GCTTGCTCTACCTGCGCTGGCAAAATTGAGGGTGGCATCGTCGATCAGTCAGATGGATCA 5809700 Query 171120 TTCCTTGATGATG---ATCAGATTGAATCAGGTTTCATTCTGACCTGCGTCTCATATCC 171175 ||||||||||||| | ||| ||| || | | |||| |||||||| || || || Sbjct 5809699 TTCCTTGATGATGCGCAGCAGGCTGA---GGGGTACGTTCTCACCTGCGTTTCCTACCC 5809644 >seq4 Length=49548238 Score = 183 bits (202), Expect = 4e-41 Identities = 220/299 (74%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 183364 TATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGACTTCAC 183423 ||||||||||| || ||||||||||| || ||||| |||| || || ||| | ||| Sbjct 24272537 TATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAGCGATCGGATTGCAC 24272596 Query 183424 TTCTATCCCATCTGGGAAGCAGCATCACTCGATGAGTGGCTGTATAACGGTGGTCCTTAC 183483 || || || || |||||||| ||||| | ||||||||| | || || || || ||||| Sbjct 24272597 TTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTAT 24272656 Query 183484 CAACTCGTAGTCTTCCACTTCCTCATTGGCGTCTTCTGCTACATGGGTCGTGAGTGGGAA 183543 | || | || | |||||| | |||| || || || ||||||| |||||||||| Sbjct 24272657 GAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCATGAGTGGGAA 24272716 Query 183544 TTGTCTTACCGTCTCGGTATGCGTCCTTGGATCTGTGTTGCTTATAGCGCACCTGTTGCT 183603 | || |||||| ||||||||||||||||| |||||| ||| || |||||||| Sbjct 24272717 CTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 24272776 Query 183604 GCTGCAACCGCTGTCTTCCTGGTCTATCCTTTCGGTCAAGGTTCTTTTAGTGATGGTAT 183662 ||||| || ||||| ||| || | | ||| | |||||||| |||| ||||| ||| Sbjct 24272777 GCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTTTTTCTGATGCTAT 24272835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622006731094560