Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031242.1 Length=174307 Score E Sequences producing significant alignments: (Bits) Value seq2 271 8e-68 seq4 196 5e-45 seq8 113 5e-20 seq2151 82.4 9e-11 >seq2 Length=61504503 Score = 271 bits (300), Expect = 8e-68 Identities = 346/471 (73%), Gaps = 9/471 (2%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 ||||| |||||| ||||| ||||| || ||| | || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGT-TTCATCATCGCCTTCATCGGTGCTC 164045 ||||| |||| ||| | | | || ||| | ||| || || ||||| ||||||| ||| | Sbjct 2078283 ATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATCGCTTTCATCGCTGCCC 2078226 Query 164046 CTCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACA 164105 |||| || || || ||||| || || || || || ||||||| | | |||||||||| Sbjct 2078225 CTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACA 2078166 Query 164106 ACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACGCTATCGGTCTGCACTTCTACCCCA 164165 | || ||||||||||| |||| ||| ||||| || ||||| ||||||| ||||| | Sbjct 2078165 ATATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAA 2078106 Query 164166 TCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACAACGGTGGTCCTTTCCAACTCGTTG 164225 | |||||||| ||| | | || || ||| | ||||| || || |||| | || ||| Sbjct 2078105 TTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTG 2078046 Query 164226 TGTTCCACTTCCTGATTGGCATCTATGCTTACATGGGTCGTGAGTGGGAACTTTCTTACC 164285 | | |||||| | |||| | | ||| ||||||||||||||||||||| || || Sbjct 2078045 TTCTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 2077986 Query 164286 GTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACTCTGCTCCTGTCGCTGCAGCGAGTG 164345 |||| |||||||||||||||||| || ||||| || |||||||| || || || | || Sbjct 2077985 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTG 2077926 Query 164346 CAGTGTTCCTGGT-----CTATCCTTTCGGTCAAGGTTCTTTCTCTGATGC 164391 | || ||| || | |||| || | |||||||| ||| |||||||| Sbjct 2077925 CTGTTTTCTTGATTGACCCTATTCTATTGGTCAAGGAAGTTTTTCTGATGC 2077875 Score = 116 bits (128), Expect = 4e-21 Identities = 117/151 (77%), Gaps = 1/151 (1%) Strand=Plus/Plus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| ||||||||||||||| | || ||||| || || | || ||| Sbjct 2076801 GACGACTGGTTACGAAGGGACCGTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 2076860 Query 165225 CCCACTGCTTATCTTGCTCTTGGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTGG 165284 || ||||||| | ||| | ||||||||| |||| ||||||||||| || || |||| Sbjct 2076861 CCTTGTGCTTATTTCGCTTTAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTGG 2076920 Query 165285 TATACTCACGGACTTGCGAGTTCCT-ATCTT 165314 ||||| || ||| | || ||||||| ||||| Sbjct 2076921 TATACCCATGGATTGGCTAGTTCCTAATCTT 2076951 >seq4 Length=49548238 Score = 196 bits (216), Expect = 5e-45 Identities = 235/318 (74%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 164082 CTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACG 164141 ||||||| | | ||||||||||| || ||||||||||| |||| ||| ||||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 164142 CTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCAAGTCTGGACGAATGGCTCTACA 164201 | ||||| ||||||| ||||| || |||||||| ||| | | || || ||| | |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 164202 ACGGTGGTCCTTTCCAACTCGTTGTGTTCCACTTCCTGATTGGCATCTATGCTTACATGG 164261 | || || |||| | || |||| | |||||| | |||| | | ||| |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 164262 GTCGTGAGTGGGAACTTTCTTACCGTCTTGGTATGCGTCCTTGGATTTGCGTAGCATACT 164321 ||| ||||||||||||| || |||||| |||||||||||||||||| || ||||| | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 164322 CTGCTCCTGTCGCTGCAGCGAGTGCAGTGTTCCTGGTCTATCCTTTCGGTCAAGGTTCTT 164381 | |||||||| || || || | ||| || ||| || | | ||| | |||||||| || Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 164382 TCTCTGATGCAAT-GCCT 164398 | |||||||| || |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 Score = 105 bits (116), Expect = 7e-18 Identities = 116/152 (76%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 165165 GACGACTGGCTTAAAAGAGACCGTTTCGTTTTTGTTGGCTGGTCTGGACTTCTTCTTTTT 165224 ||||||||| | ||| |||| |||||||||| | || ||||| || || | || ||| Sbjct 21863108 GACGACTGGTTACGAAGGGACCTTTTCGTTTTTATAGGATGGTCCGGCCTATTGCTCTTT 21863049 Query 165225 CCCACTGCTTATCTTGCTCTT-GGGGGTTGGCTTACTGGGACTACTTTCGTCACGAGTTG 165283 || ||||||| | ||| | ||||||||| |||| ||||||||||| || || ||| Sbjct 21863048 CCTTGTGCTTATTTCGCTTTAAGGGGGTTGGTTTACAGGGACTACTTTTGTAACTTCTTG 21862989 Query 165284 GTATACTCACGGACTTGCGAGTTCCT-ATCTT 165314 |||||| || ||| | || ||||||| ||||| Sbjct 21862988 GTATACCCATGGATTGGCTAGTTCCTAATCTT 21862957 >seq8 Length=47074253 Score = 113 bits (124), Expect = 5e-20 Identities = 147/201 (73%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 163928 TTCTGTAACTGGGTAACTTCAACCGACAATCGTTTGTATGTCGGTTGGTTCGGCGTCCTG 163987 |||||||||||| ||| | ||||| || ||| | || |||| ||||| || || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 163988 ATGATTCCCTGCCTGCTGG-CAGCGACTACATGTTTCATCATCGCCTTCATCGGTGCTCC 164046 ||||| |||| ||| | | | || ||| | || || ||||||||||||| |||||| Sbjct 5860655 ATGAT-CCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCC 5860597 Query 164047 TCCTGTGGACATCGATGGCATCCGCGAACCCGTCGCTGGTTCGCTCATGTATGGAAACAA 164106 ||| || || || ||||| || || || || || |||||| | | |||||||| || Sbjct 5860596 TCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAA 5860537 Query 164107 CATCATCTCTGGTGCTGTTAT 164127 || ||||||||||| |||| Sbjct 5860536 TATTGTCTCTGGTGCTATTAT 5860516 >seq2151 Length=3468 Score = 82.4 bits (90), Expect = 9e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 164082 CTGGTTCGCTCATGTATGGAAACAACATCATCTCTGGTGCTGTTATCCCTTCTTCTAACG 164141 ||||||| | | ||||||||||| || ||||||||||| |||| ||| ||||| | Sbjct 3366 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 3425 Query 164142 CTATCGGTCTGCACTTCTACCCCATCTGGGAAGCAGCA 164179 | ||||| ||||||| ||||| || |||||||| ||| Sbjct 3426 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCA 3463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557597324072160