Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Panicum_20hallii_20[genbank_20GCA_5F002211085.1_202017-07-10] 8,188 sequences; 553,845,420 total letters Query= NC_031944.1 Length=185102 Score E Sequences producing significant alignments: (Bits) Value seq2 230 3e-55 seq4 159 4e-34 seq8 109 7e-19 >seq2 Length=61504503 Score = 230 bits (254), Expect = 3e-55 Identities = 313/437 (72%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 ||||| |||||| |||| ||| || |||||||| || |||| |||||||| || || Sbjct 2078343 TTCTGCAACTGGATAACTAGCACCGAAAACCGTCTTTACATCGGATGGTTCGGTGTTTTG 2078284 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| || || || ||||| ||||||| ||| || Sbjct 2078283 ATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATCGCTTTCATCGCTGCCCCT 2078224 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| |||||||| | | ||||| ||||| Sbjct 2078223 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGTTCTTTACTTTATGGAAACAAT 2078164 Query 169532 ATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACGCAATCGGTCTTCACTTCTATCCCATC 169591 || ||||||||||| || | || |||| || ||||| | ||||| || || || Sbjct 2078163 ATTATCTCTGGTGCCATTATTCCTACTTCTGCGGCGATCGGATTGCACTTTTACCCAATT 2078104 Query 169592 TGGGAAGCAGCAAGTCTCGATGAATGGTTGTACAACGGTGGTCCTTTCCAACTGGTTGTC 169651 |||||||| ||| | | ||||| ||||| ||||| || || |||| | || |||| Sbjct 2078103 TGGGAAGCTGCATCTGTTGATGAGTGGTTATACAATGGCGGCCCTTATGAGCTAATTGTT 2078044 Query 169652 TTCCACTTCCTCATCGGCATCTATGCTTACATGGGTCGTGAGTGGGAATTGTCCTATCGT 169711 | |||||| | | || | | ||| |||||||||||||||||| | | ||| Sbjct 2078043 CTACACTTCTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 2077984 Query 169712 CTGGGTATGCGCCCTTGGATCTGTGTTGCTTACTCTGCTCCCGTTGCGGCAGCCTCCGCT 169771 ||||||||||| |||||||| |||||| || || ||||| ||||| || || | ||| Sbjct 2077983 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCTACTGCT 2077924 Query 169772 GTTTTCCTGGTCTACCC 169788 |||||| || | |||| Sbjct 2077923 GTTTTCTTGATTGACCC 2077907 >seq4 Length=49548238 Score = 159 bits (176), Expect = 4e-34 Identities = 227/318 (71%), Gaps = 1/318 (0%) Strand=Plus/Plus Query 169506 CTGGTTCTCTGATGTATGGTAACAACATCATCTCTGGTGCTGTTGTGCCCTCTTCCAACG 169565 |||||||| | | ||||| ||||| || ||||||||||| || | || |||| | Sbjct 24272523 CTGGTTCTTTACTTTATGGAAACAATATTATCTCTGGTGCCATTATTCCTACTTCTGCAG 24272582 Query 169566 CAATCGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAAGTCTCGATGAATGGTTGTACA 169625 | ||||| | ||||| || || || |||||||| ||| | | ||||| ||||| |||| Sbjct 24272583 CGATCGGATTGCACTTTTACCCAATTTGGGAAGCTGCATCTGTTGATGAGTGGTTATACA 24272642 Query 169626 ACGGTGGTCCTTTCCAACTGGTTGTCTTCCACTTCCTCATCGGCATCTATGCTTACATGG 169685 | || || |||| | || |||| | |||||| | | || | | ||| |||| Sbjct 24272643 ATGGCGGCCCTTATGAGCTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGTTATATGG 24272702 Query 169686 GTCGTGAGTGGGAATTGTCCTATCGTCTGGGTATGCGCCCTTGGATCTGTGTTGCTTACT 169745 ||| |||||||||| | | |||||||||||||| |||||||| |||||| || | Sbjct 24272703 GTCATGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATT 24272762 Query 169746 CTGCTCCCGTTGCGGCAGCCTCCGCTGTTTTCCTGGTCTACCCGTTTGGGCAAGGGTCGT 169805 | ||||| ||||| || || | ||||||||| || | |||| |||| ||||| | Sbjct 24272763 CAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATTGACCCTATTGGTCAAGGAAGTT 24272822 Query 169806 TCTCTGACGCTAT-GCCT 169822 | ||||| ||||| |||| Sbjct 24272823 TTTCTGATGCTATAGCCT 24272840 >seq8 Length=47074253 Score = 109 bits (120), Expect = 7e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 169352 TTCTGTAACTGGGTAACCTCCACTGACAACCGTCTGTATGTCGGTTGGTTCGGCGTCCTG 169411 |||||||||||| ||| ||| || |||||||| || |||| ||||| || || || Sbjct 5860715 TTCTGTAACTGGATAAGTAGCACCGAAAACCGTCTTTACATCGGATGGTTAGGTGTTTTG 5860656 Query 169412 ATGATCCCCTGCCTGCTGGCAGCAACCACTTGTTTCATCATCGCCTTCATCGGTGCTCCC 169471 |||||||| | | || | ||||| | || || ||||||||||||| |||||| Sbjct 5860655 ATGATCCCTACCTTATTGACCGCAACTTCCGTATTTATTATCGCCTTCATCGCTGCTCCT 5860596 Query 169472 CCTGTGGACATCGACGGCATCCGCGAACCCGTTGCTGGTTCTCTGATGTATGGTAACAAC 169531 || || || || || || || || || || ||| ||||||| | | ||||| || || Sbjct 5860595 CCAGTAGATATTGATGGTATTCGTGAGCCTGTTTTTGGTTCTTTACTTTATGGAAATAAT 5860536 Query 169532 ATCATCTCTGGTGCTGTT 169549 || ||||||||||| || Sbjct 5860535 ATTGTCTCTGGTGCTATT 5860518 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592137788493760