Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07]
89,584 sequences; 1,064,200,343 total letters
Query= NC_000852.5
Length=330611
Score E
Sequences producing significant alignments: (Bits) Value
seq36 152 1e-31
seq293 141 2e-28
seq86338 98.7 2e-15
seq54066 98.7 2e-15
seq486 89.7 1e-12
seq101 89.7 1e-12
>seq36
Length=6822877
Score = 152 bits (168), Expect = 1e-31
Identities = 300/440 (68%), Gaps = 13/440 (3%)
Strand=Plus/Minus
Query 230200 TGTGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 230259
|| ||||| || || | || || || ||||||||||||||||| |||||| ||| | |
Sbjct 1783736 TGCGTTGAGGGCATCTTCTTCTCTGGTAGTTTCTGCGCCATCTTCTGGCTGAAGAAGAGA 1783677
Query 230260 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGTCTCCAT 230319
|| | |||||||| ||| | | || |||||| | || ||| || ||||| || ||
Sbjct 1783676 GGGCTAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTGATGAGGGCCTGCAC 1783617
Query 230320 CAACAGTTCGGCGAG-CTTATGTATTCAAAGCTCCAGAACAAGCTACCATTCGAGACGGT 230378
| || | || | || |||| |||| | || ||||| | || | |||
Sbjct 1783616 TGTGACTTTG-CGTGTCTGCTGTACAGTCTGCTCAATAATAAGCTCTCTGAGGATAGGGT 1783558
Query 230379 CAAACAAATCATTACAGAAGCAGTTGAAAACGAAAAGGAGTTCATTTGTGACGCTATTCC 230438
| | | || || | || || || || | || | |||||| ||||||||||| ||
Sbjct 1783557 TAGAGAGATTGTTGCTGATGCTGTAGATATAGAGAGGGAGTTTGTTTGTGACGCTCCTC- 1783499
Query 230439 ATGTCGCCTTATTGGCATGAACGCTGAACTTATGGGACAGTACATCGAATTCGTAGCCGA 230498
|| | || ||||||||||| || ||| | |||||||| || || || |||||
Sbjct 1783498 --------TTGTGGGGATGAACGCTGATCTAATGAGTCAGTACATAGAGTTTGTTGCCGA 1783447
Query 230499 CCGCATTTTTGTTGCACTTGGTTACGAGAAAGTGTACAACTCTAAGAACCCCTTTGCATT 230558
|| || ||| ||| | ||||||| || ||||| | ||| || |||| |
Sbjct 1783446 TCGTCTTCTTGGTGCTTTAGGTTACGGTAAGATGTACGAGGTATCGAATCCATTTGACTG 1783387
Query 230559 TATGGAGCTCATTTCGCTTCAAGGGAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTA 230618
|||||||| ||||| |||||||||||||| ||||||||||| || | ||| |||| ||
Sbjct 1783386 GATGGAGCTTATTTCTCTTCAAGGGAAGACAAACTTCTTCGAGAAAAGGGTCGGTGAATA 1783327
Query 230619 TCAG-AGGCCTGGTGTGATG 230637
||| |||| | | ||||||
Sbjct 1783326 CCAGAAGGCGTCG-GTGATG 1783308
>seq293
Length=413263
Score = 141 bits (156), Expect = 2e-28
Identities = 312/461 (68%), Gaps = 10/461 (2%)
Strand=Plus/Plus
Query 230168 AATCGTTTGCCGAGCGTCTCGTCGCCTGGGTGTGTGTTGAAGGTATTCTGTTTTCCGGGA 230227
|||| ||||| ||||| | |||| | | ||| || ||||||||| | || ||||| |
Sbjct 226932 AATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCA 226991
Query 230228 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 230287
| |||||||||||||| ||||| ||| ||| ||||||| || ||| | | ||||
Sbjct 226992 GCTTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCTA 227051
Query 230288 ACGAGTTCATCAGTCGCGACGAGGGTCTCCATCAACAGTTCGGCGAGCTTATGTATTCAA 230347
||||| ||||| ||| |||||||| ||||| | || | ||| ||||| |
Sbjct 227052 ACGAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGCTTGCCTTCTGTAT---A 227108
Query 230348 AGCTCCAG---AACAAGCTACCATTCGAGACGGTCAAACAAATCATTACAGAAGCAGTTG 230404
|| | | |||||| | | |||| ||| | || || | || || || |
Sbjct 227109 GCCTTCTGATCAACAAGATTTCGGAGGAGAGGGTTCGGGAGATTGTTGCCGATGCTGTAG 227168
Query 230405 AAAACGAAAAGGAGTTCATTTGTGACGCTATTCCATGTCGC-CTTATTGGCATGAACGCT 230463
| | |||||||| || ||||||| || | || || ||| ||| | || ||||||||
Sbjct 227169 ATATTGAAAAGGAATTTGTTTGTGATGCACTCCCCTG-CGCTCTTGTGGGGATGAACGCA 227227
Query 230464 GAACTTATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTTGTTGCACTTGGTTAC 230523
|| || ||| | | || || |||||||| || || || || ||| || || || ||
Sbjct 227228 GATCTAATGAGCCGCTATATTGAATTCGTGGCAGATCGGCTTGTTGGAGCTCTGGGCTAT 227287
Query 230524 GAGAAAGTGTACAACTCTA-AGAACCCCTTTGCATTTATGGAGCTCATTTCGCTTCAAGG 230582
|| || |||| | || ||| || |||| | ||||| ||||| ||||| || ||
Sbjct 227288 GACAAGATGTA-TGGTGTATCGAATCCATTTGATTGGATGGAACTCATCTCGCTGCAGGG 227346
Query 230583 GAAGACCAACTTCTTCGAAAAGCGTGTCAGTGACTATCAGA 230623
||||| || ||||| || ||| | || | || |||||||
Sbjct 227347 TAAGACTAATTTCTTTGAGAAGAGGGTTGGGGAGTATCAGA 227387
>seq86338
Length=33283
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 29011 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 29070
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 29071 CCCACGGTGGGC 29082
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 28459 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGGGGGTTCGAGC 28518
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 28519 CCCCCGGTGGGC 28530
>seq54066
Length=62098
Score = 98.7 bits (108), Expect = 2e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||||||||||||||
Sbjct 55262 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 55203
Query 165770 CCCACGATGGGC 165781
|||||| |||||
Sbjct 55202 CCCACGGTGGGC 55191
>seq486
Length=1040876
Score = 89.7 bits (98), Expect = 1e-12
Identities = 65/75 (87%), Gaps = 3/75 (4%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGG---GTTCG 165766
|||||||||||||||| |||||||||| || || |||| || |||||||||| |||||
Sbjct 278410 GCCCGTCTAGCTCAGTAGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTGTTCG 278351
Query 165767 AGCCCCACGATGGGC 165781
||||||||| |||||
Sbjct 278350 AGCCCCACGGTGGGC 278336
>seq101
Length=418085
Score = 89.7 bits (98), Expect = 1e-12
Identities = 63/72 (88%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769
|||||||||||||||| |||||||||| || || |||| || ||||||| ||||||||||
Sbjct 141603 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGGGGGTTCGAGC 141544
Query 165770 CCCACGATGGGC 165781
||| || |||||
Sbjct 141543 CCCCCGGTGGGC 141532
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1056609834901920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |