Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq640 125 8e-24 seq876 98.7 1e-15 seq2 84.2 2e-11 seq152 82.4 9e-11 >seq640 Length=221176 Score = 125 bits (138), Expect = 8e-24 Identities = 147/196 (75%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| |||||||||||||| || || || || |||| || |||||||| ||||| || Sbjct 161981 TCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTGCTTCCCAGCAAAG 162040 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | |||||||| || | || | || |||||||||| ||| | || | || | ||| Sbjct 162041 ATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCC-TGAATCTTCGCTTTAACGTT 162099 Query 43113 G-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | |||||| || ||||| |||| ||||| || || |||||||| || || || Sbjct 162100 GTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCGTTAGGGTTTTGAC 162159 Query 43172 AAAGATTTGCATTTTT 43187 ||||||||||| ||| Sbjct 162160 GAAGATTTGCATCTTT 162175 >seq876 Length=1913211 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||||||||| || ||||| || || | || || || ||||| ||||| || Sbjct 665746 TCCTTCTGAATATTGTAGTCTGCCAGGGTGCGGCCATCCTCCAGTTGCTTGCCAGCAAAG 665805 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || || || |||||||| | || | || |||||||||| |||||| ||| | | Sbjct 665806 ATCAGCCGTTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGGATTTTGGCTTTCACGTTA 665865 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | | || || |||| ||||| || | ||||| ||||| ||||| || ||||| Sbjct 665866 TCAATAGTATCAGAGCTC---TCCACCTCAAGGGTGATAGTTTTCCCCGTAAGTGTCTTC 665922 Query 43170 ACAAAGATTTGCAT 43183 ||||| || ||||| Sbjct 665923 ACAAATATCTGCAT 665936 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 ||||||||||||||| |||||||| || || || | || || || ||||| || || || Sbjct 666201 CTCCTTTTGAATATTATAATCAGCAAGGGTTCGGCCATCCTCGAGTTGCTTGCCGGCAAA 666260 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || | |||||| || | || | || |||||| || ||| || || | ||| Sbjct 666261 GATCAGCCTCTGCTGATCCGGGGGAATGCCCTCCTTATCTTGGATCTTAGCCTTTA-CGT 666319 Query 43112 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 43167 | | | ||||| |||| ||||| |||| |||||||| ||||| || || |||| Sbjct 666320 TGTCGATGGTGTCAGAGCTC---TCCACCTCGAGGGTGATGGTCTTGCCAGTGAGGGTCT 666376 Query 43168 TTACAAAGATTTGCAT 43183 | || || || ||||| Sbjct 666377 TGACGAAAATCTGCAT 666392 Score = 82.4 bits (90), Expect = 9e-11 Identities = 136/195 (70%), Gaps = 6/195 (3%) Strand=Plus/Minus Query 42993 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 43052 ||||| ||||| ||||| || || || || || |||| || ||||||||||| ||||| Sbjct 531053 TCCTTCTGAATGTTGTAGTCGGCAAGGGTACGAGCGTCCTCAAGCTGCTTACCGGCGAAG 530994 Query 43053 ATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 43112 || | | |||||||| | | | | |||||||||| ||| || || | || Sbjct 530993 ATCAACCTTTGCTGGTCCGGTGAAAGTCCCTCCTTGTCCTGGATCTTCGACTTCACTATC 530934 Query 43113 GCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 43169 | || ||||| |||| ||||| |||| || || || ||||| || || || || Sbjct 530933 TCGACGGTGTCAGAGCTC---TCCACCTCGAGGGTAATAGTCTTGCCAGTGAGGGTTTTG 530877 Query 43170 ACAAAGATTTGCATT 43184 ||||| || |||||| Sbjct 530876 ACAAAAATCTGCATT 530862 >seq2 Length=81761211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/193 (70%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||||||||| || || || | || || |||||||| ||||| || Sbjct 19641175 CTCCTTCTGTATGTTGTAATCAGCAAGGGTGCGACCATCCTCCAGCTGCTTGCCAGCAAA 19641234 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || |||| ||| || || | || | || ||||| ||| ||| ||| || | ||| Sbjct 19641235 GATCAGTCTCTGTTGATCTGGAGGAATGCCTTCCTTATCCTGGATCTTTGCATTCA-CGT 19641293 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | ||||| |||||| || | ||||| || ||||| || || | ||| | Sbjct 19641294 TGTCGATGGTGTCAGAACTTTCCACCTCAAGGGTGATAGTCTTGCCGGTAAGAGACTTAA 19641353 Query 43171 CAAAGATTTGCAT 43183 ||||||||| ||| Sbjct 19641354 CAAAGATTTTCAT 19641366 >seq152 Length=2162697 Score = 82.4 bits (90), Expect = 9e-11 Identities = 63/75 (84%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||| || || ||| ||||||||| |||| |||||||||||||||| |||| Sbjct 584215 AAAAAAGTTCGCCGTTGCCGGGGATCGAACCCGGGTCACCCGCGTGACAGGCGGGAATAC 584156 Query 60117 TCACCACTATACTAC 60131 ||||||||||||||| Sbjct 584155 TCACCACTATACTAC 584141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571177278651520