Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq876 116 3e-21 seq2 114 1e-20 seq921 95.1 1e-14 seq640 84.2 2e-11 seq700 82.4 6e-11 >seq876 Length=1913211 Score = 116 bits (128), Expect = 3e-21 Identities = 141/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||| ||||| |||||||||||| || || |||| || || |||||||||||||| Sbjct 530598 CTCTTTCTGGATGTTGTAGTCGGAGAGGGTTCGGCCGTCCTCGAGCTGTTTTCCGGCGAA 530539 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| ||| ||||| || || | ||||| |||||| |||||| |||||| Sbjct 530538 AATCAACCTCTGCTGGTCCGGTGGGATGCCCTCTTTGTCCTGGATTTTTGACTTAACGAT 530479 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| || |||||| || | ||||| |||||||| || || || || || Sbjct 530478 TTCGATGGTGTCGGAACTCTCCACGTCGAGAGTAATGGTCTTGCCAGTGAGGGTTTTGAC 530419 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 530418 AAAGATCTGCAT 530407 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||||||||||||||||||| || ||| |||| || || || || |||||||| Sbjct 531053 TCCTTCTGAATGTTGTAGTCGGCAAGGGTACGAGCGTCCTCAAGCTGCTTACCGGCGAAG 530994 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||| || ||||| || | | |||||||||||| || || ||| || | Sbjct 530993 ATCAACCTTTGCTGGTCCGGTGAAAGTCCCTCCTTGTCCTGGATCTTCGACTTCACTATC 530934 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | ||| |||| | ||||||||| | |||||| |||||||| || || || || ||| Sbjct 530933 TCGACGGTGTCAGAGCTCTCCACCTCGAGGGTAATAGTCTTGCCAGTGAGGGTTTTGACA 530874 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 530873 AAAATCTGCAT 530863 >seq2 Length=81761211 Score = 114 bits (126), Expect = 1e-20 Identities = 143/196 (73%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||||||||||||||||||| || |||| | || || || || || || || || Sbjct 19641500 CTCCTTCTGAATGTTGTAGTCGGCAAGGGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 19641559 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| || || || || || | ||||||||||||| ||||| |||||| Sbjct 19641560 AATCAACCTTTGCTGATCCGGTGGGATACCCTCCTTGTCCTGGATTTTGGCCTTAACGTT 19641619 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | |||||||| | ||| ||||||||||| || ||||||||||| Sbjct 19641620 GTCGATGGTATCAGAGCTTTCCACCTCGAGGGTGATCGTCTTGCCAGTAAGAGTCTTCAC 19641679 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 19641680 GAAGATCTGCATCTTG 19641695 Score = 111 bits (122), Expect = 1e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| || ||| ||||||||| ||||||||||| ||| ||| | || || ||||| Sbjct 19640707 GTGAAGAGTGGACTCCTTCTGGATGTTGTAGTCCGCCAGAGTGCGCCCATCCTCAAGTTG 19640766 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 |||||||| || || | || ||| ||||| ||||| | ||||||||||| || || Sbjct 19640767 CTTTCCGGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATGCCCTCCTTGTCTTGGATCTT 19640826 Query 45253 TTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGT 45312 || || | | | ||||| | ||| ||||||| |||||| ||||| || || Sbjct 19640827 GGCTTTCACGTTATCGATGGTGTCCGAGCTCTCAACCTCCAAGGTAATGGTCTTCCCAGT 19640886 Query 45313 CAGAGTCTTCACAAAGATTTGCAT 45336 ||||||||||| ||||| ||||| Sbjct 19640887 AAGAGTCTTCACGAAGATCTGCAT 19640910 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 || || |||| | || || | ||| || ||| ||||||||| ||||||||||| Sbjct 19640912 CCTCCCCTCAGACGTAGAACAAGGTGGAGTGTGGACTCCTTCTGGATGTTGTAGTCTGCA 19640971 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 || ||| | || ||||| || || |||||||| ||||||| || || |||||||| Sbjct 19640972 AGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAACCTTTGCTGATCGGGAGGG 19641031 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||||| || ||| |||||| ||| || | | | | |||| | || ||| Sbjct 19641032 ATGCCCTCTTTATCCTGAATTTTGGCCTTCACGTCGTCGATGGTGTCTGAGCTTTCAACC 19641091 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || | ||| || ||||| || || ||||||||||| ||||| ||||| Sbjct 19641092 TCTAGGGTGATAGTCTTACCGGTGAGAGTCTTCACGAAGATCTGCAT 19641138 >seq921 Length=516242 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| ||||||||||| || ||| | || ||||| || || |||||||| Sbjct 186650 CTCCTTCTGGATGTTGTAGTCTGCAAGGGTACGACCATCCTCCAGCTGCTTGCCGGCGAA 186709 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| || || || ||||| | ||||| || || |||||| ||| || Sbjct 186710 GATCAACCTTTGCTGATCTGGAGGGATGCCCTCTTTATCTTGAATTTTGGCCTTCACTTT 186769 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| | || ||||| | ||| || ||||| || || ||||||||||| Sbjct 186770 GTCGATGGTGTCTGAGCTTTCAACCTCTAGGGTGATAGTCTTACCGGTGAGAGTCTTCAC 186829 Query 45325 AAAGATTTGCAT 45336 |||||| ||||| Sbjct 186830 AAAGATCTGCAT 186841 Score = 84.2 bits (92), Expect = 2e-11 Identities = 136/196 (69%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 |||||| ||||||||||||||| || || | || || || ||||| || || || Sbjct 187103 CTCCTTTTGAATGTTGTAGTCGGCAAGGGTATGACCATCCTCAAGCTGTTTGCCAGCAAA 187162 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 ||||||| || || || || | | | | |||||| || ||||| |||||| Sbjct 187163 AATCAACCTTTGCTGATCCGGTGAGATATCGTCCTTGCCCTGGATTTTAGCCTTAACGTT 187222 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | | || | |||||||| | ||| || |||||||| || ||||||||||| Sbjct 187223 ATCGATGGTATCAGAGCTTTCCACCTCGAGGGTGATTGTCTTGCCTGTGAGAGTCTTCAC 187282 Query 45325 AAAGATTTGCATGTTG 45340 ||||| ||||| ||| Sbjct 187283 GAAGATCTGCATCTTG 187298 >seq640 Length=221176 Score = 84.2 bits (92), Expect = 2e-11 Identities = 145/208 (70%), Gaps = 2/208 (1%) Strand=Plus/Plus Query 45133 GTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTG 45192 ||| ||||| ||||||||||| ||||| ||| || || |||| || || || Sbjct 161968 GTGAAGCGTCGATTCCTTCTGAATATTGTAATCGGCGAGGGTACGGCCGTCCTCAAGCTG 162027 Query 45193 TTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTT 45252 || || || || || || ||||| || || || || | |||||||||||| || | | Sbjct 162028 CTTCCCAGCAAAGATTAAGCGCTGCTGATCTGGTGGAATGCCCTCCTTGTCCTGAA-TCT 162086 Query 45253 TTGCTTAACCGCCG-CCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCG 45311 | |||| | || | | | ||||| ||||||||| | ||| || ||||| |||| Sbjct 162087 TCGCTTTAACGTTGTCGATCGTGTCCGAGGACTCCACCTCGAGGGTGATTGTCTTCCCCG 162146 Query 45312 TCAGAGTCTTCACAAAGATTTGCATGTT 45339 | || || || || ||||||||||| || Sbjct 162147 TTAGGGTTTTGACGAAGATTTGCATCTT 162174 >seq700 Length=617226 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204 ||||||||| || || ||||| || ||| | || || || || ||||||||||| Sbjct 335060 CTCCTTCTGGATATTATAGTCAGCTAGAGTGCGTCCATCCTCGAGCTGCTTTCCGGCGAA 335001 Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264 || | || || ||||| || || | || ||||||||| || || |||||| Sbjct 335000 GATAAGGCGTTGCTGGTCCGGTGGAATGCCTTCCTTGTCCTGGATCTTGGCCTTAACGTT 334941 Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324 | | | |||| ||||||||||| ||| |||||||| ||||| || || || || Sbjct 334940 GTCAATGGTGTCGGATGACTCCACCTCCAGGGTGATCGTCTTCCCCGTTAGGGTTTTTAC 334881 Query 45325 AAAGATTTGCATGTTGCC 45342 ||||| ||||| || || Sbjct 334880 GAAGATCTGCATCTTTCC 334863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394643854921264