Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq293 172 5e-38 seq403 98.7 9e-16 seq202 96.9 3e-15 seq700 87.8 2e-12 seq876 84.2 2e-11 >seq293 Length=413263 Score = 172 bits (190), Expect = 5e-38 Identities = 402/596 (67%), Gaps = 18/596 (3%) Strand=Plus/Plus Query 57546 ATGTTTCCGATTGAATATCCAGACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTT 57605 ||||| ||||| || || | |||||| | |||||||| || ||||| || || || Sbjct 226520 ATGTTCCCGATCCGCTACCCTCAGATTTGGGAGATGTACAAGAAAGCAGAGGCCTCTTTC 226579 Query 57606 TGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGGGATT---CCCTCAAA 57662 ||||| | ||||| || || || || | || | | | |||||| |||||| Sbjct 226580 TGGACTGCGGAAGAGGTCGATCTCTCACAAGACGTTCGGCAATGGGATCACACCCTCACC 226639 Query 57663 GAATCTGA---GAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCCGCATCCGATGGT 57719 ||||| | | | ||||| | |||| |||| || |||||||| || |||||| Sbjct 226640 ---TCTGACGAGCGCCACTTTATCACCTACGTCCTGGCCTTCTTCGCCGCTTCTGATGGT 226696 Query 57720 ATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTGACGGAGGCGAGA 57779 || || ||||| | | || | | || | ||| || ||| | |||||||| | Sbjct 226697 ATCGTGCTGGAGAACCTCGCCGGACGCTTCATGCGAGAGGTTCAACTTCCGGAGGCGCGC 226756 Query 57780 TGCTTT-TACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATGTATTCGCTACT 57838 ||||| || || || || | ||||| |||||| | || || || |||||| || || Sbjct 226757 -GCTTTCTATGGCTTCCAGATCGCCATCGAAAACATTCACTCCGAGATGTATAGTCTTCT 226815 Query 57839 CATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGACTGTTCAACGCGATCGAAAC 57898 | |||| || ||| | |||||| | ||| ||| | || || ||| |||||||| Sbjct 226816 CCTCGAGACCTACATCAAGGACTCCACCGAAAAATCCAATCTTTTTCGCGCCATCGAAAC 226875 Query 57899 AATGCCC-GCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGG 57957 | ||| ||| ||||| ||||| ||||| || | ||||| | |||| | | Sbjct 226876 CGTACCCTGCG-TCGCCCGTAAGGCTCAGTGGGCACTGCGCTGGATTGA---CGCCTCTG 226931 Query 57958 CCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCA 58017 | || || ||| || | |||| || || |||||||||||| ||||| || |||| Sbjct 226932 AATCATTTGCTGAGCGGATTCTCGCTTTTGCGTGCGTCGAAGGTATTTTCTTCTCCGGCA 226991 Query 58018 GCTT-TGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGC 58076 |||| ||| || || || ||| | ||||| ||||| ||||||| || || || ||| Sbjct 226992 GCTTCTGC-GCCATCTTCTGGCTCAAGAAGCGCGGTTTGATGCCAGGTCTCACTTTTTCT 227050 Query 58077 AACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTA 58132 |||||| | || || || |||||||| ||||| || ||||| ||||| |||| Sbjct 227051 AACGAGCTCATCTCTCGTGACGAGGGACTCCACTGCGACTTTGCTTGCCTTCTGTA 227106 >seq403 Length=1478721 Score = 98.7 bits (108), Expect = 9e-16 Identities = 128/174 (74%), Gaps = 5/174 (3%) Strand=Plus/Minus Query 22493 TAAATGTTGGATGTGAACGGTTCGAAAGATTCATTGTTTCCCAGTATCTGAGCGGTCGAA 22552 || ||||| |||||| | || || || | ||||||||||| || |||||| ||||||| Sbjct 387834 TAGATGTTTGATGTGTATGGCTCAAAGCACTCATTGTTTCCAAGAATCTGACTGGTCGAA 387775 Query 22553 GCGGTCGGCATCGGCGCCAACAGTAGCGAGTTTCTCAAGCCGTGCTTTGAAA-TTTTACT 22611 ||||| |||||||| || | || || |||||||| | || | ||| |||| |||| || Sbjct 387774 GCGGTGGGCATCGGAGCAACAAGAAGGGAGTTTCTTACTCCATTCTTAGAAATTTTTTCT 387715 Query 22612 CTTGAGCATCGACCAGTCCCACAGATCGGACGGCGTCACATTGTCCCACATATC 22665 ||| | | | ||| |||||| | | || || || ||||| |||||| || Sbjct 387714 CTT-AAAGTAGGCCAATCCCACCGGGCAGAAGGGGTTACATT---CCACATGTC 387665 >seq202 Length=4793652 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| || || |||||||| || || || || |||||| | || || ||| || Sbjct 4329348 CATGCAAATCTTTGTGAAGACTCTTACTGGAAAGACCATCACCCTTGAGGTAGAAAGCTC 4329407 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | | || | || || || || ||| ||||| ||| | || || || || Sbjct 4329408 TGATACAATTGATAACGTGAAGGCGAAGATTCAGGATAAGGAGGGCATTCCTCCTGATCA 4329467 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||||||||| || || || ||||||||| | || || | || || |||||||| Sbjct 4329468 GCAGCGTCTCATCTTTGCCGGCAAACAGCTCGAGGATGGTCGCACGCTGGCTGATTATAA 4329527 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| || ||||||||||| ||||| || || || Sbjct 4329528 CATCCAGAAAGAATCGACACTTCACCTTGTTCT 4329560 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| ||||| || ||||| || || || || |||||||| | || ||||| ||| Sbjct 4328570 ATGCAGATTTTTGTGAAGACCCTAACTGGTAAGACGATCACTCTTGAAGTTGAGAGCTCC 4328629 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | || |||||| |||||| | || || |||||| Sbjct 4328630 GACACCATAGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGCATTCCTCCGGACCAG 4328689 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | |||| || ||||| || ||| | || || || | ||||||||| Sbjct 4328690 CAGAGGTTAATTTTTGCTGGGAAGCAGCTTGAGGATGGCCGCACACTTGCAGATTATAAC 4328749 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| || || || || || ||||| || | |||| ||||| |||| Sbjct 4328750 ATTCAGAAGGAGTCTACCCTCCATCTTGTGTTGCGACTCAGGGGAGGTA 4328798 >seq700 Length=617226 Score = 87.8 bits (96), Expect = 2e-12 Identities = 174/246 (71%), Gaps = 10/246 (4%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 ||| ||||| || |||||||| || || || || || ||||||||| | || || || | Sbjct 334865 AAAGATGCAGATCTTCGTAAAAACCCTAACGGGGAAGACGATCACCCTGGAGGTGGAGTC 334924 Query 31249 GTCCGACAGTGTCGA-AACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCG 31307 ||||||| | || |||| | | | ||| | ||||||||||||| | || || | Sbjct 334925 ATCCGACACCATTGACAACGTTAAGGCCAAGA-TCCAGGACAAGGAAGGCATTCCACCGG 334983 Query 31308 ACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGC-GA 31365 ||||||| || || || ||||| || || ||| | || || | | | ||| | ||| || Sbjct 334984 ACCAGCAACGCCTTATCTTCGCCGGAAAGCAGCTCGAGGA-TGGACGCACTCT-AGCTGA 335041 Query 31366 TTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT--GAGG-GGCG-GTA 31421 ||||| || || || || ||||| || || || || ||| | || |||| |||| | Sbjct 335042 CTATAATATCCAGAAGGAGTCGACCCTCCACCTCGTCCTTCGCCTTCGAGGTGGCGCCAA 335101 Query 31422 GAAGCG 31427 |||||| Sbjct 335102 GAAGCG 335107 >seq876 Length=1913211 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || ||||| || || || || || |||||| | || || || || Sbjct 666164 ATGCAGATATTTGTCAAGACCCTTACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 666105 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | ||| ||||||||| ||| | || || |||||| Sbjct 666104 GACACTATAGACAACGTGAAGGCTAAAATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 666045 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || ||||| ||||| |||||| | || || || | ||||||||| Sbjct 666044 CAAAGGCTGATATTTGCTGGAAAACAGCTTGAGGATGGCCGTACCCTTGCTGATTATAAC 665985 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || || || ||||| || || ||||| || ||| | || ||||| |||| Sbjct 665984 ATCCAGAAGGAATCTACCCTACATCTCGTGCTTCGTCTTAGGGGTGGTA 665936 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445267230785280