Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq36 102 6e-17 >seq36 Length=6822877 Score = 102 bits (112), Expect = 6e-17 Identities = 311/476 (65%), Gaps = 16/476 (3%) Strand=Plus/Minus Query 22686 CAAGGCACAGTGGGCTGCACAATGGCTGAATGCCACACATAAGTCTATCGCAACACGTCT 22745 |||||||||||||||| | ||| | | ||| | || ||| | ||| || | Sbjct 1783806 CAAGGCACAGTGGGCTCTCCGCTGGATCGACGCCTCCGAT---TCTTTTGCAGAGCGAAT 1783750 Query 22746 CTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCATATTCT 22804 | || ||||| ||||| ||| || | || ||||| || ||| ||||| |||| Sbjct 1783749 TCTTGCATTTGCTTGCGTTGAGGGCATCTTCTTCTCTGGTAGTTTCTGC-GCCATCTTCT 1783691 Query 22805 GGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTG 22864 |||||||||| | ||| ||||| || | | |||||||||||| | ||| |||| Sbjct 1783690 GGCTGAAGAAGAGAGGGCTAATGCCTGGTCTCACTTTTTCCAACGAGCTTATTTCTCGTG 1783631 Query 22865 ACGAAGGTCTACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGT 22924 | || || || |||||||||||||| ||| |||||| || | | || || | | Sbjct 1783630 ATGAGGGCCTGCACTGTGACTTTGCGTGTCTGCTGTACAGTCTGCTCAATAATAAGCTCT 1783571 Query 22925 GTCAGGACGATGCACATCAAATCATATCTGATGCCGTTGACATTGAGACGG-CTTTCTTC 22983 | |||| | | || | ||||||| || || || |||| || ||| || Sbjct 1783570 CTGAGGATAGGGTTAGAGAGATTGTTGCTGATGCTGTAGATATAGAGAGGGAGTTTGTT- 1783512 Query 22984 CAAGAGGCACTAAAGACACCCCTACTTGGTATGAATAGTGACAGTATGAGACTGTACATA 23043 | | | || || || | || ||||| ||| ||||| | ||||||| Sbjct 1783511 --TGTGACGCT-------CCTCTTGTGGGGATGAACGCTGATCTAATGAGTCAGTACATA 1783461 Query 23044 CAGTTTGTTGCAGATCGCCTGCTCGATGCCCTGGGTTATGCAAAGATGTATAACGTTGCC 23103 |||||||||| ||||| || || | ||| | ||||| | |||||||| | || | Sbjct 1783460 GAGTTTGTTGCCGATCGTCTTCTTGGTGCTTTAGGTTACGGTAAGATGTACGAGGTATCG 1783401 Query 23104 AATCCATTTGATTTCATGGATAACATTAGCATTGAAGGTAAAACAAACTTCTTTGA 23159 ||||||||||| | ||||| ||| || |||| || ||||||||||| || Sbjct 1783400 AATCCATTTGACTGGATGGAGCTTATTTCTCTTCAAGGGAAGACAAACTTCTTCGA 1783345 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355844662374352