Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Phalaenopsis_20equestris_20[refseq_20GCF_5F001263595.1_202015-08-07] 89,584 sequences; 1,064,200,343 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq36 152 7e-32 seq403 104 3e-17 seq468 91.5 2e-13 >seq36 Length=6822877 Score = 152 bits (168), Expect = 7e-32 Identities = 410/624 (66%), Gaps = 5/624 (1%) Strand=Plus/Plus Query 42057 ACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAA 42116 ||| || ||| || || || |||||||| |||||||| | | ||| | |||||||||| Sbjct 1783595 ACAGCAGACACGCAAAGTCACAGTGCAGGCCCTCATCACGAGAAATAAGCTCGTTGGAAA 1783654 Query 42117 ACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCA 42175 | ||||| || |||||||| || | ||| || ||||| || || | |||| || ||| Sbjct 1783655 AAGTGAGACCAGGCATTAGCCCTCTCTTCTTCAGCCAGAAGAT-GGCGCAGAAACTACCA 1783713 Query 42176 GAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTG 42235 || |||||||| || || || ||||| |||| || || |||| || || | | Sbjct 1783714 GAGAAGAAGATGCCCTCAACGCAAGCAAATGCAAGAATTCGCTCTGCAAAAGAATCGGAG 1783773 Query 42236 TCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATG 42295 | | ||||| ||||||| | ||||| || || || | || || || Sbjct 1783774 GCGTCGATCCAGCGGAGAGCCCACTGTGCCTTGCGGGCGACGCAGGGAACGGTCTCGATA 1783833 Query 42296 GCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTA 42355 |||| ||||| | ||| || ||||| | || || |||| | || || Sbjct 1783834 GCATGGAAGAGGTGCGATTTCTCTGCGGAGTCTTTGATGTAGGTTTCGAGAAGCAGGCTG 1783893 Query 42356 TACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCG 42415 ||||| || || || |||||||| ||||| ||||||||||| |||||| | ||||| Sbjct 1783894 TACATCTCGGAGTGGATGTTTTCGATGGCGATCTGAAATCCATAGAAAGCGCGCGCCTCC 1783953 Query 42416 GTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTG 42475 | | |||||| || || || |||| | || || || |||||||| Sbjct 1783954 GGGAGCTGTACCTCCCGCATGAAGCGGCCAGCGAGGTTCTCTAGAACGATTCCGTCGGAA 1784013 Query 42476 GCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCCGGTGTTA---ATTTA 42532 || || || || || | || || ||| |||| |||||| | || | ||| | Sbjct 1784014 GCGGCGAAGAAAGCGAGAACGTGGGTTACGAAATGCCGTTCGTCGGAGGTGAGGGATTCA 1784073 Query 42533 TTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAATGATGCTTCT 42592 ||||| | || ||||| || | ||| ||||||||| | ||||| || || ||||| Sbjct 1784074 TTCCAGTGGCGGAGATCTTGGGACAGATCAACTTCTTCTGCTGTCCAGAAAGAGGCTTCG 1784133 Query 42593 GCCTTTTTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAACAAATCTATTT 42652 || || || ||||| | |||||| | | | || | || || || || || | | Sbjct 1784134 GCTTTCTTGTACATCTCCCAGATCTGAGGGTAGCGGATCGGAAACATGCAGAAGCGGTCA 1784193 Query 42653 GGATTTGGTGCAAGGATCGGTTCC 42676 |||||||| ||||||| || ||| Sbjct 1784194 GGATTTGGAGCAAGGAGGGGCTCC 1784217 >seq403 Length=1478721 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| ||||||||||||||||| || || ||||| |||| |||| Sbjct 384297 AGTGCCTGCATTGAATAAGGTAGGAGAAGCATGAGTGAACCACCGCAGTGACATCAGATG 384238 Query 72477 GTACGTCTCAATAGCTGATTCTATATCC-CATTGATGTATTCCTACCGCGACACGCATTA 72535 ||| || | ||| || || || ||||| |||| ||| || |||| || || | ||| | Sbjct 384237 GTAGGTTTTAATGGCAGAATCAATATCTTCATT-ATGAATCCCTATAGCAACTCTCATCA 384179 Query 72536 ACATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCA 72595 |||||||||| || ||||| || | || | || ||| || | || || | || | Sbjct 384178 ACATATGCTGCGGCCTTTCCACCACTTTCCCAGATACTTTTAAAAGATAAGACCTCTCGA 384119 Query 72596 AAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||||||||||||| || | || |||||||| || ||||| || Sbjct 384118 GAGTTTTAAAACCAAAGTAATCATAATCAAAGTCTCTATCATAAATGAT 384070 >seq468 Length=902046 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 72417 AGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATT 72476 ||| || ||||| || | |||||||||||||| ||||||||| | ||||| | || Sbjct 789176 AGTGCCTGCATTGAACAGTGTAGGAGAAGCGTGAGTAAACCATCGCTGAGACATCAAATG 789117 Query 72477 GTACGTCTCAATAGCTGATTCTATATCCCATTGATGTATTCCTACCGCGACACGCATTAA 72536 ||| || || || || | ||||| || || || || || || || | ||| || Sbjct 789116 GTATGTTCTGATTGCAGACACAATATCATCTTTGTGAATCCCAACAGCAACTCTCATCAA 789057 Query 72537 CATATGCTGAGGTCTTTCAACGATCTTGTTATTTATTTTCAACAAGTAGGATTTTTCCAA 72596 ||| || ||||| ||||| | || ||| | | |||||| | ||||||| || | Sbjct 789056 CATGTGTTGAGGCCTTTCGATGACCTTCCCAGAAACTTTCAAGAGGTAGGATCGCTCGAG 788997 Query 72597 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 72644 ||||| ||||||||||| | ||| ||| || | || || ||||| Sbjct 788996 GGTTTTGAAACCAAAATAATCGTAGTCAAAATCCCTGTCATATATAAT 788949 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 670387658323840